Factsheet for GSMUA_Achr10P18560_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P00720_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13170.1	GSMUA_Achr5P00720_001	AT4G14180.1	17762870

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057070	Potato	mitochondrion	39.25	39.67
Solyc07g065440.2.1	Tomato	nucleus	26.88	34.01
VIT_19s0015g00280.t01	Wine grape	cytosol	55.38	28.53
AT3G13170.1	Thale cress	cytosol	52.15	26.8
CDY24207	Canola	cytosol	52.15	26.8
CDY43366	Canola	cytosol	52.15	26.8
Bra039374.1-P	Field mustard	cytosol	51.08	26.24
TraesCS5B01G396300.1	Wheat	nucleus	53.76	25.91
TraesCS5D01G401100.1	Wheat	nucleus	52.69	25.32
KRH73898	Soybean	cytosol	49.46	25.07
EER93438	Sorghum	nucleus	51.61	25.07
Os03t0752200-01	Rice	nucleus	51.08	24.93
TraesCS5A01G391400.2	Wheat	nucleus	52.69	24.56
Solyc07g065430.2.1	Tomato	cytosol	22.04	10.71
GSMUA_AchrUn_...	Banana	plasma membrane	24.73	7.74
GSMUA_Achr10P...	Banana	nucleus	0.54	0.91

Protein Annotations

Gene3D:3.40.1360.10	MapMan:35.1	GO:GO:0000166	GO:GO:0000737	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr10G18560_001	EnsemblPlants:GSMUA_Achr10P18560_001
EnsemblPlants:GSMUA_Achr10T18560_001	UniProt:M0RJD1	PFAM:PF04406	PRINTS:PR01550	PANTHER:PTHR10848	PANTHER:PTHR10848:SF3
SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	TMHMM:TMhelix	UniParc:UPI000295CE53

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G18560_001]

Coordinates

chr10:+:25217694..25221934

Molecular Weight (calculated)

21389.8 Da

IEP (calculated)

8.488

GRAVY (calculated)

0.520

Length

186 amino acids

Sequence
(BLAST)

001: MHTDCVKYLS CLFLPLQLVF VISLVLFRVL LIIQQLLQEN KHGSKRDIYY MHPALFLEQA VVDRAINNIC ILLKCSRQHL NVVPVGRGLV MGWLRFLEAG
101: RKIYCINSPS TVYPIPVCLE EVVAVLICYF VLPISVFQRL ANDRFCERNH CIVITGRGYP DVPTRRHAQS SCAFLYNICI CQCIAW

Best Arabidopsis Sequence Match ( AT3G13170.1 )
(BLAST)

001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP

Arabidopsis Description

SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.