Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
GSMUA_Achr10P... | |
GSMUA_Achr10P... | |
GSMUA_Achr5P00720_001 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G14180.1 | GSMUA_Achr10P... | AT3G13170.1 | 17762870 |
AT4G14180.1 | GSMUA_Achr10P... | AT3G13170.1 | 17762870 |
AT4G14180.1 | GSMUA_Achr5P00720_001 | AT4G14180.1 | 17762870 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os04t0347700-01 | Rice | extracellular, plasma membrane | 7.92 | 49.76 |
VIT_05s0062g00140.t01 | Wine grape | cytosol | 46.84 | 49.0 |
HORVU2Hr1G067040.5 | Barley | extracellular, plasma membrane | 42.5 | 47.98 |
TraesCS2A01G275100.2 | Wheat | plastid | 46.08 | 47.16 |
TraesCS2B01G292500.2 | Wheat | plasma membrane | 42.35 | 46.1 |
OQU76853 | Sorghum | plasma membrane | 35.87 | 44.6 |
Zm00001d046970_P002 | Maize | plastid | 43.95 | 44.45 |
TraesCS2D01G274100.1 | Wheat | mitochondrion | 45.85 | 44.2 |
KRH31552 | Soybean | cytosol | 42.5 | 43.19 |
Os04t0347800-01 | Rice | endoplasmic reticulum, vacuole | 13.79 | 42.49 |
AT4G14180.1 | Thale cress | cytosol, nucleus, plasma membrane, plastid | 41.28 | 40.75 |
PGSC0003DMT400063222 | Potato | endoplasmic reticulum, extracellular, vacuole | 11.04 | 40.73 |
Solyc03g114040.2.1 | Tomato | cytosol, nucleus, plasma membrane, plastid | 39.76 | 38.93 |
CDY05132 | Canola | cytosol, nucleus, plasma membrane | 39.3 | 38.65 |
CDX90779 | Canola | cytosol | 38.69 | 38.08 |
Bra000733.1-P | Field mustard | plasma membrane | 33.97 | 37.01 |
TraesCS2B01G292600.1 | Wheat | plastid | 4.04 | 35.33 |
Protein Annotations
EnsemblPlants:GSMUA_Achr5P00720_001 | EnsemblPlants:GSMUA_Achr5T00720_001 | EnsemblPlantsGene:GSMUA_Achr5G00720_001 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold |
PANTHER:PTHR36379 | SEG:seg | SUPFAM:SSF48371 | UniParc:UPI000296A8F1 | UniProt:M0SUK1 | MapMan:13.3.6.2.2 |
Description
Putative Protein PRD1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G00720_001]
Coordinates
chr5:+:409350..418049
Molecular Weight (calculated)
147408.0 Da
IEP (calculated)
4.898
GRAVY (calculated)
0.173
Length
1313 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEYLDDGDE NELEMADAAC EKGHRPSMAV ATAEGGAICL VCLSALLSDR RALTHHVSYA LSQLSAAIRC PEFVRRLAGR QPHLLVSPLV RALSSFDDEP
0101: LARQLIDLVS DLSGCGLPCS VFGDFITRIA DFLSSGALAW SRRQFFMLHC LGVLLNSCKE YNPAAHIRDK AALFSTLVVG LQLPSEEIRG EIMFVLYKMS
0201: LQQATPWDDE NNHDIDLSSK GNSLLQLSLE ALLKTQKDDV RINCVALLMV LARRGVFDNS FENDQIGGFN KEIDKPIHGD EVVFSSPLIE MFADAIKGPL
0301: LSSDSQLQTS TLDLVFHIFS SGATCLKKIQ ALVENNIADY VFEALRLSGN RDSLIISCLQ VLNLLATAEE VFIQRLAIGF PTLLAVLRYV TEIPLHPVQN
0401: HALKLVWTCI TNCPGIMSIS QVEEIAVILT GIFRRPDMGE LAMVSETFTL ACSTFVEILR SPSACNIQQL ALLFQEASRN AVIASLSSHE DPDKLLYSLY
0501: LLKEVYTCGV EGYSHASCAR KELEENIIET CLTYLLPWLG RVIDGGQDEE IVLGIIETFH IVLLVGSEIQ ARHFAESLVS SSWFSLSFGC LGLFPTDQMK
0601: TRIYLMLSSV IDRLLGSDFG ESIRDCYPNL PSDPLELIYL LGQSYLDDPL MASCQCAVLM MLYVNSLYGE RFTDGNQVLA SLEQYILVNV SSNSSCEIAN
0701: SMMLSQLVHL YALVRSDPFS CQSLCSTEAE KSVFCLIAEM ELDLFSIGLH PRAVKWFFQQ EEIMKPLSYL VLNFCRSYST NKAQICTQSN CIKLLDIQMI
0801: ADLIVSGDNF VTELLVSLVK ELEEGREDDI SHLVNAMTDI LNIFPGASDE FSLHGIAEAL NRVFYLTHDA LIIKTCSLFI FNVLSLANHE TLSQDKNWLG
0901: ILLKLLEHLR PKLVHYSFGQ EEHLILAIFS LILHYSTRQV LQEASKAILL DKSLASAVEK VVQTACEKGP ALNAYDEETP IGETLIFLLL LYVFSLRSLH
1001: AVFQETMDWQ DFFQLADESY PSSVICIKCH DLCRLLHFGS SIVKLVSSQC LLELLTTVSE QREKKKKEPN WSVRYVESVI TVAEGLLFYG DFTTSSNCRA
1101: CLSMLLGWEK SGSLDKKVIG NSKWFRLVME ELIMTLAAPC FASRSFTNQH KPAAHMAIFF LKMDKVPSWM KSVFSHSSIS GILNNLSACS LTSDMVKLFR
1201: ELRVRKYLNK EQVDALHNLF QVRILSSTYK NYVEQFQVYA YVCRKQVYKD ISREEVVEEN IHKVMKTPYD TGDVCTVLIK LLLSSNSYYN EIQSEHEKLL
1301: EEIDLFLQFS TIQ
0101: LARQLIDLVS DLSGCGLPCS VFGDFITRIA DFLSSGALAW SRRQFFMLHC LGVLLNSCKE YNPAAHIRDK AALFSTLVVG LQLPSEEIRG EIMFVLYKMS
0201: LQQATPWDDE NNHDIDLSSK GNSLLQLSLE ALLKTQKDDV RINCVALLMV LARRGVFDNS FENDQIGGFN KEIDKPIHGD EVVFSSPLIE MFADAIKGPL
0301: LSSDSQLQTS TLDLVFHIFS SGATCLKKIQ ALVENNIADY VFEALRLSGN RDSLIISCLQ VLNLLATAEE VFIQRLAIGF PTLLAVLRYV TEIPLHPVQN
0401: HALKLVWTCI TNCPGIMSIS QVEEIAVILT GIFRRPDMGE LAMVSETFTL ACSTFVEILR SPSACNIQQL ALLFQEASRN AVIASLSSHE DPDKLLYSLY
0501: LLKEVYTCGV EGYSHASCAR KELEENIIET CLTYLLPWLG RVIDGGQDEE IVLGIIETFH IVLLVGSEIQ ARHFAESLVS SSWFSLSFGC LGLFPTDQMK
0601: TRIYLMLSSV IDRLLGSDFG ESIRDCYPNL PSDPLELIYL LGQSYLDDPL MASCQCAVLM MLYVNSLYGE RFTDGNQVLA SLEQYILVNV SSNSSCEIAN
0701: SMMLSQLVHL YALVRSDPFS CQSLCSTEAE KSVFCLIAEM ELDLFSIGLH PRAVKWFFQQ EEIMKPLSYL VLNFCRSYST NKAQICTQSN CIKLLDIQMI
0801: ADLIVSGDNF VTELLVSLVK ELEEGREDDI SHLVNAMTDI LNIFPGASDE FSLHGIAEAL NRVFYLTHDA LIIKTCSLFI FNVLSLANHE TLSQDKNWLG
0901: ILLKLLEHLR PKLVHYSFGQ EEHLILAIFS LILHYSTRQV LQEASKAILL DKSLASAVEK VVQTACEKGP ALNAYDEETP IGETLIFLLL LYVFSLRSLH
1001: AVFQETMDWQ DFFQLADESY PSSVICIKCH DLCRLLHFGS SIVKLVSSQC LLELLTTVSE QREKKKKEPN WSVRYVESVI TVAEGLLFYG DFTTSSNCRA
1101: CLSMLLGWEK SGSLDKKVIG NSKWFRLVME ELIMTLAAPC FASRSFTNQH KPAAHMAIFF LKMDKVPSWM KSVFSHSSIS GILNNLSACS LTSDMVKLFR
1201: ELRVRKYLNK EQVDALHNLF QVRILSSTYK NYVEQFQVYA YVCRKQVYKD ISREEVVEEN IHKVMKTPYD TGDVCTVLIK LLLSSNSYYN EIQSEHEKLL
1301: EEIDLFLQFS TIQ
0001: MFFQHSQLQN SDHLLHESMA DSNHQSLSPP CANGHRSTIS LRDDQGGTFC LICFSNLVSD PRIPTVHVSY ALHQLSIAIS EPIFLRTLLS SHIHFLVSPL
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
Arabidopsis Description
PRD1Protein PRD1 [Source:UniProtKB/Swiss-Prot;Acc:O23277]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.