Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14180.1 | CDY24207 | AT3G13170.1 | 17762870 |
| AT4G14180.1 | CDY43366 | AT3G13170.1 | 17762870 |
| AT4G14180.1 | CDX90779 | AT4G14180.1 | 17762870 |
| AT4G14180.1 | CDY05132 | AT4G14180.1 | 17762870 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90779 | Canola | cytosol | 93.26 | 93.33 |
| AT4G14180.1 | Thale cress | cytosol, nucleus, plasma membrane, plastid | 78.95 | 79.25 |
| VIT_05s0062g00140.t01 | Wine grape | cytosol | 46.44 | 49.4 |
| KRH31552 | Soybean | cytosol | 44.64 | 46.13 |
| Solyc03g114040.2.1 | Tomato | cytosol, nucleus, plasma membrane, plastid | 39.7 | 39.52 |
| GSMUA_Achr5P00720_001 | Banana | nucleus | 38.65 | 39.3 |
| Os04t0347700-01 | Rice | extracellular, plasma membrane | 5.92 | 37.8 |
| PGSC0003DMT400063222 | Potato | endoplasmic reticulum, extracellular, vacuole | 9.96 | 37.36 |
| HORVU2Hr1G067040.5 | Barley | extracellular, plasma membrane | 32.36 | 37.15 |
| TraesCS2A01G275100.2 | Wheat | plastid | 35.66 | 37.1 |
| TraesCS2B01G292600.1 | Wheat | plastid | 4.12 | 36.67 |
| Os04t0347800-01 | Rice | endoplasmic reticulum, vacuole | 11.69 | 36.62 |
| Zm00001d046970_P002 | Maize | plastid | 34.61 | 35.59 |
| TraesCS2B01G292500.2 | Wheat | plasma membrane | 31.69 | 35.07 |
| TraesCS2D01G274100.1 | Wheat | mitochondrion | 35.73 | 35.02 |
| OQU76853 | Sorghum | plasma membrane | 27.57 | 34.85 |
Protein Annotations
| EnsemblPlants:CDY05132 | EnsemblPlantsGene:GSBRNA2T00119922001 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | PANTHER:PTHR36379 |
| ProteinID:CDY05132 | ProteinID:CDY05132.1 | SEG:seg | SUPFAM:SSF48371 | UniParc:UPI0004EDF920 | MapMan:13.3.6.2.2 |
Description
BnaC03g29300D
Coordinates
chrLK031959:+:956217..961501
Molecular Weight (calculated)
149428.0 Da
IEP (calculated)
5.603
GRAVY (calculated)
0.134
Length
1335 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFFLDSQVQD SDHLLREPVA GDLNHLPPPC VNGHRSTVSL RTDQGGAFCF HCFSDLVSNP RAPTVHVSYA LHQLSVALSE PIFLRNLLSS HVRFLVSPLV
0101: NALSIFDDAP IASQIMDTIS LLCSAEECSI GEEFVERVSA QLSSGALGWS RRQLHMLHCF GVLLSSEKID INSHIRDKES LVCLLVEGLQ LPSEEIRGEI
0201: FFVLYKFSAL QFTEQDVDGA EVLSSLCPKL LSLSLEALAK TQRDEVRLNC IALLTTLAQQ GLLANSRTSP VSSMSLDEVD DDPMLTAETV TAWPCLDILF
0301: AEAIKGPLLS TDSEVQIKTL DLIFHYVSQE SVPSKQIEVL VEENVADYIF EILRLSECKD HVINSCLRVL DLFSLAEHSF RKKLVIGFPS VIQVLHYVGE
0401: VPCHPFQIQT LKLVSSCISD FPGIASSSQV QEIALVLKMM LERYYSQEMG LFPDAFAIIC SVFVSLMKTP SFAETPDVFK SLQDSLRHAV LVCLSLPEKD
0501: SSQISHAAYL LNEVYAYCTS PTSINNTGCI ELRQCVIDVC VSHLLPWFLS DVNEVNEEAI LGIMESFHSI LLQNSDVQAM EFAEILVSAD WFSFAFGCLG
0601: NFSSDKMKQR VYQMLSSLVD VLHRQKLGSH IRDALFCLPS DPQDLLFLLG QDSSNNQELA SCQLAALVIF HTGWIHNDRL ADDKLVFASL EQYILVNRIS
0701: LISDFPAVLQ LVNLYSLCRS LQNKRYQISY SLEAERIVFH LLNEYDWDLG SCDIHLESLR WLFQQESISK GLTYQIQKIS RNNLIGKEVH NVYGDGRQRS
0801: LTYWFAKMIS EGDNYAATLL VNLLTHLAEN GDKESDVISI LNIMTTVVSK FPTASNHLSM NGIGNAIHRL VCSFTNSSMG TSFPTLLVLI FNILASVQPG
0901: VLKNDESWNA VFIKLLHYLS LRDTAITQNH EGVMVIGILC LVLYHSSHGA LLDSSRIIMV NSYLVSAINN VVDVACSRGP ALTQSQDETE IWEALAFTLP
1001: LCFFSLRSLQ IVLAGAVDWQ TFCGPSSNLE TLPVVCIQCH NLCRLMHFGT PQIKLMASYC LLELFTGLSQ QIDIRKEQLR CSPSYLKAMK AVLSGLVFYD
1101: DIRVATNSAL CLSMILGWEG MEGRTEMLKT SSWYRFITEE MSVSLAMPCS ASNTFVNHHK PAVYATVAML RLKNKPAWLR SVFDESCISG MIQNLNGTNI
1201: SSEIVILFRE LMQAQLLNSD QVTKLNLVFL ASRKQMLRNG TLEETVEEQM QRTVSSIHDH GEVCSYLVDL MVSNSCGHTS GGSETTCRQK KKHVLVEMER
1301: FSELLSTRRD KVTDSRPCKV YARQRKRINA KWDKS
0101: NALSIFDDAP IASQIMDTIS LLCSAEECSI GEEFVERVSA QLSSGALGWS RRQLHMLHCF GVLLSSEKID INSHIRDKES LVCLLVEGLQ LPSEEIRGEI
0201: FFVLYKFSAL QFTEQDVDGA EVLSSLCPKL LSLSLEALAK TQRDEVRLNC IALLTTLAQQ GLLANSRTSP VSSMSLDEVD DDPMLTAETV TAWPCLDILF
0301: AEAIKGPLLS TDSEVQIKTL DLIFHYVSQE SVPSKQIEVL VEENVADYIF EILRLSECKD HVINSCLRVL DLFSLAEHSF RKKLVIGFPS VIQVLHYVGE
0401: VPCHPFQIQT LKLVSSCISD FPGIASSSQV QEIALVLKMM LERYYSQEMG LFPDAFAIIC SVFVSLMKTP SFAETPDVFK SLQDSLRHAV LVCLSLPEKD
0501: SSQISHAAYL LNEVYAYCTS PTSINNTGCI ELRQCVIDVC VSHLLPWFLS DVNEVNEEAI LGIMESFHSI LLQNSDVQAM EFAEILVSAD WFSFAFGCLG
0601: NFSSDKMKQR VYQMLSSLVD VLHRQKLGSH IRDALFCLPS DPQDLLFLLG QDSSNNQELA SCQLAALVIF HTGWIHNDRL ADDKLVFASL EQYILVNRIS
0701: LISDFPAVLQ LVNLYSLCRS LQNKRYQISY SLEAERIVFH LLNEYDWDLG SCDIHLESLR WLFQQESISK GLTYQIQKIS RNNLIGKEVH NVYGDGRQRS
0801: LTYWFAKMIS EGDNYAATLL VNLLTHLAEN GDKESDVISI LNIMTTVVSK FPTASNHLSM NGIGNAIHRL VCSFTNSSMG TSFPTLLVLI FNILASVQPG
0901: VLKNDESWNA VFIKLLHYLS LRDTAITQNH EGVMVIGILC LVLYHSSHGA LLDSSRIIMV NSYLVSAINN VVDVACSRGP ALTQSQDETE IWEALAFTLP
1001: LCFFSLRSLQ IVLAGAVDWQ TFCGPSSNLE TLPVVCIQCH NLCRLMHFGT PQIKLMASYC LLELFTGLSQ QIDIRKEQLR CSPSYLKAMK AVLSGLVFYD
1101: DIRVATNSAL CLSMILGWEG MEGRTEMLKT SSWYRFITEE MSVSLAMPCS ASNTFVNHHK PAVYATVAML RLKNKPAWLR SVFDESCISG MIQNLNGTNI
1201: SSEIVILFRE LMQAQLLNSD QVTKLNLVFL ASRKQMLRNG TLEETVEEQM QRTVSSIHDH GEVCSYLVDL MVSNSCGHTS GGSETTCRQK KKHVLVEMER
1301: FSELLSTRRD KVTDSRPCKV YARQRKRINA KWDKS
0001: MFFQHSQLQN SDHLLHESMA DSNHQSLSPP CANGHRSTIS LRDDQGGTFC LICFSNLVSD PRIPTVHVSY ALHQLSIAIS EPIFLRTLLS SHIHFLVSPL
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
Arabidopsis Description
PRD1Protein PRD1 [Source:UniProtKB/Swiss-Prot;Acc:O23277]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.