Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G067040.5 | Barley | extracellular, plasma membrane | 89.72 | 93.04 |
| Os04t0347700-01 | Rice | extracellular, plasma membrane | 13.93 | 80.38 |
| Os04t0347800-01 | Rice | endoplasmic reticulum, vacuole | 24.88 | 70.42 |
| GSMUA_Achr5P00720_001 | Banana | nucleus | 46.1 | 42.35 |
| VIT_05s0062g00140.t01 | Wine grape | cytosol | 39.05 | 37.53 |
| PGSC0003DMT400063222 | Potato | endoplasmic reticulum, extracellular, vacuole | 10.95 | 37.08 |
| KRH31552 | Soybean | cytosol | 37.89 | 35.37 |
| Bra000733.1-P | Field mustard | plasma membrane | 33.25 | 33.28 |
| AT4G14180.1 | Thale cress | cytosol, nucleus, plasma membrane, plastid | 36.07 | 32.71 |
| Solyc03g114040.2.1 | Tomato | cytosol, nucleus, plasma membrane, plastid | 35.82 | 32.21 |
| CDY05132 | Canola | cytosol, nucleus, plasma membrane | 35.07 | 31.69 |
| CDX90779 | Canola | cytosol | 34.83 | 31.48 |
| TraesCS2B01G292600.1 | Wheat | plastid | 0.75 | 6.0 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G292500.2 | EnsemblPlantsGene:TraesCS2B01G292500 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | PANTHER:PTHR36379 |
| SEG:seg | SUPFAM:SSF48371 | MapMan:13.3.6.2.2 | : | : | : |
Description
No Description!
Coordinates
chr2B:+:407226551..407242781
Molecular Weight (calculated)
134250.0 Da
IEP (calculated)
4.799
GRAVY (calculated)
0.273
Length
1206 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTPSGAATHG YFCWNRGSKK ATSNTAGDED DDLRCCIQRV VCWNRPAKKL HPHRPVLEFD DQLHCLGFLL NSIKGAAAYI GDAVSLFLNL VNNLRLPSDE
0101: IRGEILFMLY KLSLLNATPW DNICDNDNVD LSAVGKSLLQ LSLEVLLKTQ NDAVRLNCIA LLLALAKKEA FDILLLGDLS LIKSVEEEES SQTDDVPLNA
0201: SIIVLFADAV KGSLLSTNLE VQTGTLDLIF HFLSSDANIC VVLQTLIDEN VADYVFEVLR LSGNNDPLVI SSIQVLSLLA TSEEMFKEKL AIGFSTLLPV
0301: LHYVTEIPFH PVQSQVLRLV WICIANCSGI LSLSQEEQIA CTLTLILRRN DSGELGMCSE TFALVCSILI EIMRSPSAHD IQKLPSLIEE ASKHAISSTL
0401: PHAYDSAFLV PHSLRLLKEA LIFCLEGNTD KISVKKDLED SVIEICGTYL LHWLETAVVD GNDDETLGEI LQIFHIILSS TCHNKQLKFA EMLASSSWFS
0501: LSFGFMGLFP TDHVKSVVYL ITSSIVDKIL GCKYGETIRD AYVYLPSDPT ELVYLLGQCS SEDFNLASCQ CAILVILYAC SFYNERLVAD SQLLSSVEQY
0601: ILLNGGKFPY EIAGSVMLTL LVHLYAFVRG ISFGCTIQHS PEAERTLFHV MACKEWDLLF IRVHPIALKW LFQKVELLEP LSFQMLNFCR TFCEDRTVVL
0701: LNSSQLVDIK MVAELVFSGE TSLSSLLVSL LNQIIKDGTE DELFSVVNVI AEILVISPCS SSHFTSSGVI DAVGSIYCSP YSSRIKTVCS LLIFNILYSA
0801: SAVTVYWEDE WLALTMKLLE YFNSSLDYTS SDQEQKILIG IFCLILHHSA SKVLIEPAKA IILNKPLVSL TDGIIQEACA KGPSLLQYNQ ETDFGGFIIL
0901: ILQLVFFSLR SLHAILDPSI DWQEFLQHSD NTQFFSVVGI PCHDLCRLMH FGPYPVKLIA SQCLLELLTR ISNQRSYLNA ELRCSAQYMK SIIAVIEGLV
1001: LSQDNRVAEN CGSCLSMILG WEKFGSQENM VGRESKWSRL IMEEFAVALT APGLTSKSFS NQQKIASNIA VSLLKLSQVP EWLTSLFDSS LISGVVGNLS
1101: ARNVTADIVK LFSELMTKKY LTQEHVVSLH NLFQVCRRQV YEGSCSKSKL SEQKAEETVA RSPDEVCALL FGIVLNQRTA SCTLQMERQN LLREIDLFFQ
1201: ESRQGE
0101: IRGEILFMLY KLSLLNATPW DNICDNDNVD LSAVGKSLLQ LSLEVLLKTQ NDAVRLNCIA LLLALAKKEA FDILLLGDLS LIKSVEEEES SQTDDVPLNA
0201: SIIVLFADAV KGSLLSTNLE VQTGTLDLIF HFLSSDANIC VVLQTLIDEN VADYVFEVLR LSGNNDPLVI SSIQVLSLLA TSEEMFKEKL AIGFSTLLPV
0301: LHYVTEIPFH PVQSQVLRLV WICIANCSGI LSLSQEEQIA CTLTLILRRN DSGELGMCSE TFALVCSILI EIMRSPSAHD IQKLPSLIEE ASKHAISSTL
0401: PHAYDSAFLV PHSLRLLKEA LIFCLEGNTD KISVKKDLED SVIEICGTYL LHWLETAVVD GNDDETLGEI LQIFHIILSS TCHNKQLKFA EMLASSSWFS
0501: LSFGFMGLFP TDHVKSVVYL ITSSIVDKIL GCKYGETIRD AYVYLPSDPT ELVYLLGQCS SEDFNLASCQ CAILVILYAC SFYNERLVAD SQLLSSVEQY
0601: ILLNGGKFPY EIAGSVMLTL LVHLYAFVRG ISFGCTIQHS PEAERTLFHV MACKEWDLLF IRVHPIALKW LFQKVELLEP LSFQMLNFCR TFCEDRTVVL
0701: LNSSQLVDIK MVAELVFSGE TSLSSLLVSL LNQIIKDGTE DELFSVVNVI AEILVISPCS SSHFTSSGVI DAVGSIYCSP YSSRIKTVCS LLIFNILYSA
0801: SAVTVYWEDE WLALTMKLLE YFNSSLDYTS SDQEQKILIG IFCLILHHSA SKVLIEPAKA IILNKPLVSL TDGIIQEACA KGPSLLQYNQ ETDFGGFIIL
0901: ILQLVFFSLR SLHAILDPSI DWQEFLQHSD NTQFFSVVGI PCHDLCRLMH FGPYPVKLIA SQCLLELLTR ISNQRSYLNA ELRCSAQYMK SIIAVIEGLV
1001: LSQDNRVAEN CGSCLSMILG WEKFGSQENM VGRESKWSRL IMEEFAVALT APGLTSKSFS NQQKIASNIA VSLLKLSQVP EWLTSLFDSS LISGVVGNLS
1101: ARNVTADIVK LFSELMTKKY LTQEHVVSLH NLFQVCRRQV YEGSCSKSKL SEQKAEETVA RSPDEVCALL FGIVLNQRTA SCTLQMERQN LLREIDLFFQ
1201: ESRQGE
0001: MFFQHSQLQN SDHLLHESMA DSNHQSLSPP CANGHRSTIS LRDDQGGTFC LICFSNLVSD PRIPTVHVSY ALHQLSIAIS EPIFLRTLLS SHIHFLVSPL
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
Arabidopsis Description
PRD1Protein PRD1 [Source:UniProtKB/Swiss-Prot;Acc:O23277]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.