Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g114040.2.1 | |
| Solyc07g065430.2.1 | |
| Solyc07g065440.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14180.1 | Solyc07g065430.2.1 | AT3G13170.1 | 17762870 |
| AT4G14180.1 | Solyc07g065440.2.1 | AT3G13170.1 | 17762870 |
| AT4G14180.1 | Solyc03g114040.2.1 | AT4G14180.1 | 17762870 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400063222 | Potato | endoplasmic reticulum, extracellular, vacuole | 24.53 | 92.42 |
| VIT_05s0062g00140.t01 | Wine grape | cytosol | 48.17 | 51.47 |
| KRH31552 | Soybean | cytosol | 44.15 | 45.82 |
| Os04t0347700-01 | Rice | extracellular, plasma membrane | 6.56 | 42.11 |
| AT4G14180.1 | Thale cress | cytosol, nucleus, plasma membrane, plastid | 40.19 | 40.53 |
| CDX90779 | Canola | cytosol | 39.75 | 39.95 |
| GSMUA_Achr5P00720_001 | Banana | nucleus | 38.93 | 39.76 |
| CDY05132 | Canola | cytosol, nucleus, plasma membrane | 39.52 | 39.7 |
| Bra000733.1-P | Field mustard | plasma membrane | 35.2 | 39.17 |
| OQU76853 | Sorghum | plasma membrane | 30.05 | 38.16 |
| TraesCS2A01G275100.2 | Wheat | plastid | 36.24 | 37.88 |
| HORVU2Hr1G067040.5 | Barley | extracellular, plasma membrane | 32.51 | 37.49 |
| TraesCS2B01G292600.1 | Wheat | plastid | 4.18 | 37.33 |
| Zm00001d046970_P002 | Maize | plastid | 35.2 | 36.36 |
| TraesCS2B01G292500.2 | Wheat | plasma membrane | 32.21 | 35.82 |
| TraesCS2D01G274100.1 | Wheat | mitochondrion | 35.87 | 35.32 |
| Os04t0347800-01 | Rice | endoplasmic reticulum, vacuole | 11.19 | 35.21 |
Protein Annotations
| EnsemblPlants:Solyc03g114040.2.1 | EnsemblPlantsGene:Solyc03g114040.2 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | PANTHER:PTHR36379 |
| SEG:seg | SUPFAM:SSF48371 | UniParc:UPI0002767FE8 | UniProt:K4BKQ6 | MapMan:13.3.6.2.2 | : |
Description
Protein PRD1 [Source:Projected from Arabidopsis thaliana (AT4G14180) UniProtKB/Swiss-Prot;Acc:O23277]
Coordinates
chr3:-:64082370..64088836
Molecular Weight (calculated)
149882.0 Da
IEP (calculated)
5.293
GRAVY (calculated)
0.192
Length
1341 amino acids
Sequence
(BLAST)
(BLAST)
0001: MYFATSQLPH SPPSPSLEPP LTCAQGHSST LIIPTDEGGS ICLLCLSNLI SNPRSPTVHV SYALSQLSIA LFQPSFRQTF FTFHSHFLIS PLVGVLSSFY
0101: DEPIAKQTMD LIMQLCEAPD CDVHAEFVAR LADRLSSGSL AWSQRQLHSP TVISKAFSTE NDLEDPIKIY TKNRSSLGLP KKPFLLSRRN GCPHFQSRQW
0201: PSIVQVTLET ETVAISFCLK QSPEGQFLLE YSEDIQGEIL FVLYKLFLLN GSQDGEDPPS LFGHFSKLLH LALAVLMKAQ SDDVRLNCIA FLTVMMQRGF
0301: FQTTSIIGTR SRSCYDVDHL METNEQISDG PLAILFAEAV KGPLLSSDNQ VQIAALDLLY LYLSRKDVLE NEIQVFVEEN IADYAFEVLR LSGCKDPTIK
0401: SCIQLLDILA TAEQAFRQRL AIGFMALIPV LHHVAEIPFH PVQTKTLRLI WNSVENCPGV VSKSQVEEIS LSLTGMLKKN LDGEIGMLPE TLALVCSIFV
0501: ALMKCSSTCG ISSFSLSIQD ASRNCILTCL INYGKYPGQL LNSLYLLKEA YSYSVGMNSS SSMNTDLRRS IIDVCKTHIL PWFMKSLHEM EDEDIPAAIL
0601: ENFYSILLQD SDTETKIFAN VLLTSSWFSF AYGCLGLFPS EKMKRNVYLI FSVMTDIILG VDSARCISDA APHLPSDPID LLFLLGHKSS QNVELSSRQL
0701: AVLLLLYISS LYDDRIADDK LVLASLEQYI LLNSSENMHG ASVLGIFINL YALYRGLAKV SYQIPYSPEA ERIVFHLLAE KGWDLLSTRI HVTSLKWLFQ
0801: QEKICNVLSA QILKFCRCHC SNINQINIHG EANQKIDVYV MTELVALGDN FVGTLMVFLL GEAGEQYSEY DVVSLVNTIK RIIEISPSTS DQFCLHGIAT
0901: AIKNLYYKFG HSLSPDTFMS ISELVSYILQ AVHSESLSDD ESWVAIVVKI IDYLIPSVAA DGWTPGTLIS IGILSMVLHH SVNQVMVEAS KTIILSTHML
1001: SLVNTTIANA CSKGPSLLEQ NEGARSVEAL VFVLSLLFFS LRSAHAILPG IMDFQYLLDP TNIPQPWSYI SIQCHDLCKL LHFGSIPIKL LSSQYLLELF
1101: SGIEDEKSRK SDTLEFRTNY LTSIMAVLEG QLFSSDMSVA MNCSLCLSML IGWQDVETEV SAIQRNNWCR FIVEELVISL AAPSLASKSF MIHHKPAIHI
1201: AVELLRRKKV LQWMTSIFDE SCIFAITRNI TNSNLSAELV FLLRKLLNYG FLNDEQIAAL NQVFQECRKC IYTDKLQHAG AEEKTWNVAA ASDYVGKVCQ
1301: FLISLVTTQP SSGMESSRFQ SEKRELLEEI DLFSKCLMRE D
0101: DEPIAKQTMD LIMQLCEAPD CDVHAEFVAR LADRLSSGSL AWSQRQLHSP TVISKAFSTE NDLEDPIKIY TKNRSSLGLP KKPFLLSRRN GCPHFQSRQW
0201: PSIVQVTLET ETVAISFCLK QSPEGQFLLE YSEDIQGEIL FVLYKLFLLN GSQDGEDPPS LFGHFSKLLH LALAVLMKAQ SDDVRLNCIA FLTVMMQRGF
0301: FQTTSIIGTR SRSCYDVDHL METNEQISDG PLAILFAEAV KGPLLSSDNQ VQIAALDLLY LYLSRKDVLE NEIQVFVEEN IADYAFEVLR LSGCKDPTIK
0401: SCIQLLDILA TAEQAFRQRL AIGFMALIPV LHHVAEIPFH PVQTKTLRLI WNSVENCPGV VSKSQVEEIS LSLTGMLKKN LDGEIGMLPE TLALVCSIFV
0501: ALMKCSSTCG ISSFSLSIQD ASRNCILTCL INYGKYPGQL LNSLYLLKEA YSYSVGMNSS SSMNTDLRRS IIDVCKTHIL PWFMKSLHEM EDEDIPAAIL
0601: ENFYSILLQD SDTETKIFAN VLLTSSWFSF AYGCLGLFPS EKMKRNVYLI FSVMTDIILG VDSARCISDA APHLPSDPID LLFLLGHKSS QNVELSSRQL
0701: AVLLLLYISS LYDDRIADDK LVLASLEQYI LLNSSENMHG ASVLGIFINL YALYRGLAKV SYQIPYSPEA ERIVFHLLAE KGWDLLSTRI HVTSLKWLFQ
0801: QEKICNVLSA QILKFCRCHC SNINQINIHG EANQKIDVYV MTELVALGDN FVGTLMVFLL GEAGEQYSEY DVVSLVNTIK RIIEISPSTS DQFCLHGIAT
0901: AIKNLYYKFG HSLSPDTFMS ISELVSYILQ AVHSESLSDD ESWVAIVVKI IDYLIPSVAA DGWTPGTLIS IGILSMVLHH SVNQVMVEAS KTIILSTHML
1001: SLVNTTIANA CSKGPSLLEQ NEGARSVEAL VFVLSLLFFS LRSAHAILPG IMDFQYLLDP TNIPQPWSYI SIQCHDLCKL LHFGSIPIKL LSSQYLLELF
1101: SGIEDEKSRK SDTLEFRTNY LTSIMAVLEG QLFSSDMSVA MNCSLCLSML IGWQDVETEV SAIQRNNWCR FIVEELVISL AAPSLASKSF MIHHKPAIHI
1201: AVELLRRKKV LQWMTSIFDE SCIFAITRNI TNSNLSAELV FLLRKLLNYG FLNDEQIAAL NQVFQECRKC IYTDKLQHAG AEEKTWNVAA ASDYVGKVCQ
1301: FLISLVTTQP SSGMESSRFQ SEKRELLEEI DLFSKCLMRE D
0001: MFFQHSQLQN SDHLLHESMA DSNHQSLSPP CANGHRSTIS LRDDQGGTFC LICFSNLVSD PRIPTVHVSY ALHQLSIAIS EPIFLRTLLS SHIHFLVSPL
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
Arabidopsis Description
PRD1Protein PRD1 [Source:UniProtKB/Swiss-Prot;Acc:O23277]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.