Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0752200-01 | |
| Os04t0347700-01 | |
| Os04t0347800-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14180.1 | Os03t0752200-01 | AT3G13170.1 | 17762870 |
| AT4G14180.1 | Os04t0347700-01 | AT4G14180.1 | 17762870 |
| AT4G14180.1 | Os04t0347800-01 | AT4G14180.1 | 17762870 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU76853 | Sorghum | plasma membrane | 76.56 | 15.15 |
| HORVU2Hr1G067040.5 | Barley | extracellular, plasma membrane | 80.38 | 14.45 |
| TraesCS2B01G292500.2 | Wheat | plasma membrane | 80.38 | 13.93 |
| TraesCS2A01G275100.2 | Wheat | plastid | 80.86 | 13.17 |
| TraesCS2D01G274100.1 | Wheat | mitochondrion | 80.38 | 12.33 |
| Zm00001d046970_P002 | Maize | plastid | 76.08 | 12.25 |
| GSMUA_Achr5P00720_001 | Banana | nucleus | 49.76 | 7.92 |
| VIT_05s0062g00140.t01 | Wine grape | cytosol | 45.93 | 7.65 |
| KRH31552 | Soybean | cytosol | 43.06 | 6.97 |
| Bra000733.1-P | Field mustard | plasma membrane | 38.76 | 6.72 |
| AT4G14180.1 | Thale cress | cytosol, nucleus, plasma membrane, plastid | 42.58 | 6.69 |
| Solyc03g114040.2.1 | Tomato | cytosol, nucleus, plasma membrane, plastid | 42.11 | 6.56 |
| CDX90779 | Canola | cytosol | 38.76 | 6.07 |
| CDY05132 | Canola | cytosol, nucleus, plasma membrane | 37.8 | 5.92 |
| Os04t0347800-01 | Rice | endoplasmic reticulum, vacuole | 0.0 | 0.0 |
| PGSC0003DMT400063222 | Potato | endoplasmic reticulum, extracellular, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os04t0347700-01 | EnsemblPlantsGene:Os04g0347700 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR36379 |
| ProteinID:BAF14430.1 | ProteinID:BAS88699.1 | UniParc:UPI0000DD9016 | UniProt:Q0JE07 | MapMan:13.3.6.2.2 | : |
Description
Similar to OSIGBa0130K07.4 protein. (Os04t0347700-01)
Coordinates
chr4:+:16547339..16548061
Molecular Weight (calculated)
23689.0 Da
IEP (calculated)
5.206
GRAVY (calculated)
0.434
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: SLSFGFMGLF PTDHVKSAVY LVISSIVDKV LGISYGETIR DACIYLPPDP AELLYLLGQC SSEDFNLASC QCAILVILYV CSFYNERLAA DNQILASVEQ
101: YILLNGAKFP HEIPGSLMLT LLVHLYAFVR GISFRFGIPH SPEAEKTLFH AMTHKEWDLL LIRVHLIALK WLFQNEELME PLSFHLLNFC KFFCEDRTVM
201: LSSSTQLVD
101: YILLNGAKFP HEIPGSLMLT LLVHLYAFVR GISFRFGIPH SPEAEKTLFH AMTHKEWDLL LIRVHLIALK WLFQNEELME PLSFHLLNFC KFFCEDRTVM
201: LSSSTQLVD
0001: MFFQHSQLQN SDHLLHESMA DSNHQSLSPP CANGHRSTIS LRDDQGGTFC LICFSNLVSD PRIPTVHVSY ALHQLSIAIS EPIFLRTLLS SHIHFLVSPL
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
Arabidopsis Description
PRD1Protein PRD1 [Source:UniProtKB/Swiss-Prot;Acc:O23277]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.