Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000733.1-P | |
| Bra039374.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14180.1 | Bra039374.1-P | AT3G13170.1 | 17762870 |
| AT4G14180.1 | Bra000733.1-P | AT4G14180.1 | 17762870 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90779 | Canola | cytosol | 95.44 | 86.21 |
| AT4G14180.1 | Thale cress | cytosol, nucleus, plasma membrane, plastid | 78.09 | 70.75 |
| VIT_05s0062g00140.t01 | Wine grape | cytosol | 45.56 | 43.74 |
| KRH31552 | Soybean | cytosol | 43.15 | 40.25 |
| Os04t0347700-01 | Rice | extracellular, plasma membrane | 6.72 | 38.76 |
| PGSC0003DMT400063222 | Potato | endoplasmic reticulum, extracellular, vacuole | 11.12 | 37.64 |
| Os04t0347800-01 | Rice | endoplasmic reticulum, vacuole | 12.78 | 36.15 |
| Solyc03g114040.2.1 | Tomato | cytosol, nucleus, plasma membrane, plastid | 39.17 | 35.2 |
| HORVU2Hr1G067040.5 | Barley | extracellular, plasma membrane | 33.94 | 35.17 |
| OQU76853 | Sorghum | plasma membrane | 29.79 | 34.0 |
| GSMUA_Achr5P00720_001 | Banana | nucleus | 37.01 | 33.97 |
| TraesCS2B01G292500.2 | Wheat | plasma membrane | 33.28 | 33.25 |
| TraesCS2A01G275100.2 | Wheat | plastid | 34.27 | 32.19 |
| Zm00001d046970_P002 | Maize | plastid | 33.28 | 30.89 |
| TraesCS2D01G274100.1 | Wheat | mitochondrion | 34.44 | 30.47 |
| TraesCS2B01G292600.1 | Wheat | plastid | 1.24 | 10.0 |
Protein Annotations
Description
AT4G14180 (E=1e-272) AtPRD1 | AtPRD1 (Arabidopsis thaliana Putative Recombination initiation Defect 1); protein binding / protein homodimerization
Coordinates
chrA03:+:12732667..12737234
Molecular Weight (calculated)
135581.0 Da
IEP (calculated)
5.280
GRAVY (calculated)
0.151
Length
1205 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDTISLLCSA EECSVSEEFV ERVSAQLSSG ALGWSRRQLH MMWMTPLFFI SCVYEACCDL SFLCHASEEI RGEIFFVLYK FSALQFTEQD VDGAEILSSL
0101: SPKLLSLSLE ALAKTQRDEV RLNCIALLTT LTQQGLLANS RTSPVSSMSL DEVDDDPMLT AETVTVRPCL DILFAEAIKG PLLSTDSEVQ IKALDLIFHY
0201: VSQESVPSKQ IEVLVEENVA DYIFEILRLS ECKDHVINPC LRVLDLFSLA ELSFRKKLVI GFPSVIQVLH YVGEVPCHPF QVQTLKLVSS CISDFPEIAS
0301: SSQVQEISLV LKMMLERYYS QEMGLFPDAF AIICSVFVSL MKTPSFAETP DVFKSLQDSL RHAVLVCLSL PEKDSTQISH AVYLLNKVYA YCTSPTSINN
0401: TGCIELRQCV IDVCVSHLLP WFLSDVNEVN EEAILGIMES FHFILLQNSD VQAMEFAEIL VSADWFSFAF GCLGNFSSDK MKQRVYQMLS SLVDVLHRQK
0501: LGSHIRDALF CLPSDPQDLL FLLGQDSSNN QELASCQFAA LVIFHTGWIH NDRLADDKLV FASLEQYILV NRTSLISDSP AVLQLVNLYS LCRSLQNKRY
0601: QISYSLEAER IVFHLLNEYD WDLGSCDIHL ESLKWLFQQE SISKGLTYQI QKISRNNLIG KEVHNVYGDG RQRSLTYWFA KMISEGDNYA ATLLVNLLTH
0701: LAENGDKESD VISILNIMTT VVSKFPTASN HLSMNGIGNA IHRLVCSFRN SSMGTSFPTL LVLIFNILAS VQPGVLKNDE SWNAVFIKLL HYLSLRDTAI
0801: TQPDHEGMMV IGILCLVLYH SSHGALLDSS RIIMVNSYLV SAINNVVDVA CSRGPALTQS QDETEIWEAL AFTLPLCFSS LRSLQIVLAG AVDWQTFCGP
0901: SSNLETLPVV CIHCHNLCRL MHFGTPQIKL MASYCLLELF TGLSQQIDIR KEQLRCSSSY LKAMKAVLCG LVFYDDIRVA TNSALCLSMI IGWEDMEGRT
1001: EMLKTCSWYR FITEEMSVSL AMPCSASNTF VNHHKPAVYV TVAMLRLKNK PVWLRSVFDE SCISSMIQNL NVTNISSEIV ILFRELIQAQ LLNSDQVTKL
1101: NLVFLASRKQ MQRNGTLDET VEEQMQRTVS SIHDHGEVCS YLVDMMLSSS FGHTSGSEAT CIQKKKQVLA EMEQFSELLS TRRDYVTDSR PCKVYTRQRK
1201: RIHAK
0101: SPKLLSLSLE ALAKTQRDEV RLNCIALLTT LTQQGLLANS RTSPVSSMSL DEVDDDPMLT AETVTVRPCL DILFAEAIKG PLLSTDSEVQ IKALDLIFHY
0201: VSQESVPSKQ IEVLVEENVA DYIFEILRLS ECKDHVINPC LRVLDLFSLA ELSFRKKLVI GFPSVIQVLH YVGEVPCHPF QVQTLKLVSS CISDFPEIAS
0301: SSQVQEISLV LKMMLERYYS QEMGLFPDAF AIICSVFVSL MKTPSFAETP DVFKSLQDSL RHAVLVCLSL PEKDSTQISH AVYLLNKVYA YCTSPTSINN
0401: TGCIELRQCV IDVCVSHLLP WFLSDVNEVN EEAILGIMES FHFILLQNSD VQAMEFAEIL VSADWFSFAF GCLGNFSSDK MKQRVYQMLS SLVDVLHRQK
0501: LGSHIRDALF CLPSDPQDLL FLLGQDSSNN QELASCQFAA LVIFHTGWIH NDRLADDKLV FASLEQYILV NRTSLISDSP AVLQLVNLYS LCRSLQNKRY
0601: QISYSLEAER IVFHLLNEYD WDLGSCDIHL ESLKWLFQQE SISKGLTYQI QKISRNNLIG KEVHNVYGDG RQRSLTYWFA KMISEGDNYA ATLLVNLLTH
0701: LAENGDKESD VISILNIMTT VVSKFPTASN HLSMNGIGNA IHRLVCSFRN SSMGTSFPTL LVLIFNILAS VQPGVLKNDE SWNAVFIKLL HYLSLRDTAI
0801: TQPDHEGMMV IGILCLVLYH SSHGALLDSS RIIMVNSYLV SAINNVVDVA CSRGPALTQS QDETEIWEAL AFTLPLCFSS LRSLQIVLAG AVDWQTFCGP
0901: SSNLETLPVV CIHCHNLCRL MHFGTPQIKL MASYCLLELF TGLSQQIDIR KEQLRCSSSY LKAMKAVLCG LVFYDDIRVA TNSALCLSMI IGWEDMEGRT
1001: EMLKTCSWYR FITEEMSVSL AMPCSASNTF VNHHKPAVYV TVAMLRLKNK PVWLRSVFDE SCISSMIQNL NVTNISSEIV ILFRELIQAQ LLNSDQVTKL
1101: NLVFLASRKQ MQRNGTLDET VEEQMQRTVS SIHDHGEVCS YLVDMMLSSS FGHTSGSEAT CIQKKKQVLA EMEQFSELLS TRRDYVTDSR PCKVYTRQRK
1201: RIHAK
0001: MFFQHSQLQN SDHLLHESMA DSNHQSLSPP CANGHRSTIS LRDDQGGTFC LICFSNLVSD PRIPTVHVSY ALHQLSIAIS EPIFLRTLLS SHIHFLVSPL
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
Arabidopsis Description
PRD1Protein PRD1 [Source:UniProtKB/Swiss-Prot;Acc:O23277]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.