Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 5
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14180.1 | EER93438 | AT3G13170.1 | 17762870 |
| AT4G14180.1 | OQU76853 | AT4G14180.1 | 17762870 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0347700-01 | Rice | extracellular, plasma membrane | 15.15 | 76.56 |
| Zm00001d046970_P002 | Maize | plastid | 86.17 | 70.11 |
| Os04t0347800-01 | Rice | endoplasmic reticulum, vacuole | 27.37 | 67.84 |
| HORVU2Hr1G067040.5 | Barley | extracellular, plasma membrane | 70.27 | 63.8 |
| TraesCS2A01G275100.2 | Wheat | plastid | 70.93 | 58.38 |
| TraesCS2D01G274100.1 | Wheat | mitochondrion | 70.74 | 54.85 |
| PGSC0003DMT400063222 | Potato | endoplasmic reticulum, extracellular, vacuole | 13.54 | 40.17 |
| GSMUA_Achr5P00720_001 | Banana | nucleus | 44.6 | 35.87 |
| VIT_05s0062g00140.t01 | Wine grape | cytosol | 39.49 | 33.23 |
| KRH31552 | Soybean | cytosol | 39.39 | 32.2 |
| Solyc03g114040.2.1 | Tomato | cytosol, nucleus, plasma membrane, plastid | 38.16 | 30.05 |
| Bra000733.1-P | Field mustard | plasma membrane | 34.0 | 29.79 |
| AT4G14180.1 | Thale cress | cytosol, nucleus, plasma membrane, plastid | 37.22 | 29.55 |
| CDY05132 | Canola | cytosol, nucleus, plasma membrane | 34.85 | 27.57 |
| CDX90779 | Canola | cytosol | 34.28 | 27.14 |
| TraesCS2B01G292600.1 | Wheat | plastid | 0.57 | 4.0 |
Protein Annotations
| EnsemblPlants:OQU76853 | EnsemblPlantsGene:SORBI_3010G222900 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | PANTHER:PTHR36379 |
| ProteinID:OQU76853 | ProteinID:OQU76853.1 | SEG:seg | SUPFAM:SSF48371 | UniParc:UPI0009DC8E38 | UniProt:A0A1W0VU89 |
| MapMan:13.3.6.2.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:56499804..56506625
Molecular Weight (calculated)
117614.0 Da
IEP (calculated)
4.876
GRAVY (calculated)
0.285
Length
1056 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQTDYMSLNA SLVLFAEAVK GSLLSTNLEV QTGTLDLIFH FLSSDANICA LLQILIDENV ADYIFEVLRL SGNNDLLVIS SIRVLLLFAR LEEKFKEKLA
0101: IGFSTLLPVL HYVAEIPFHP VQSHVLRLVW ICMVNCSGIL SMPQEEQIAC TLTAILRRNV NGELDMSSET FILVCSILIE ILKSPHAHDI EKLPSFIEEA
0201: SKYAISSTLS HECDSMILIL HSLLLLKEAL IFCLEGSKYS IASTKDLEDS IMGTCGTILL QWLQSAVVDG NDEETLAEIL QIFQIILSRA SDKKPLKFAE
0301: LLASSSWFSL SFGFMGLFPT DRVKSVVYLV TSSIVDRVLG CNYGETIRDA HIYLPSDPTE MMYLLGQCST EDFNLASCQC AILSILYACS FYNERLCANN
0401: QILASVEQYI LLNGGNFPYE INGSIMLTLL VHLYAFVRGI SYSCSIPYSP EAENTLFHLI IHKDWDLLVT RVHSVAIKWL FQKQEIVEPL AFQMLKFCKT
0501: FCEDETVMLS NSSQSVDIQM ISELVLSGET TISSLLVSLL DQMVKEGTED EVFSVVSVIA EILMISPRSS DQFISCGIVG SFHGIYCLPY SSSSRTVCSY
0601: LIFNILRSAS ASTFGQEDEW LPLALKLLEF ITSGIDYTSS GQEHKIVVGI LCLVLHHSSS EFLIEPAKAI ILNSSLVSLT DAIVNKACVK GPSLFQHNQE
0701: TTFGEFLILV LLLAFFSLRS LHTILEASID WQDFLQHSDD VQSFSVLGIP CHDLCRLMHF GSPSIKLIAS QCLLELLKRI SDQRSCIDAE LRCSTKYLKS
0801: IIAVTEGLLF SEDSKVAGNC SACLSVILGW EKFGSQEKVA VRESKWFRLI MEEFVVALTA PGLTSKSFTS QQKFAAIIAV SLLRLSQVPD WLTSLFDGHL
0901: ISGIVANLSA RNVTAEIVIL FSELMARKYL SQEHIVDLHN LFQVCRRQVY EGSSKAALPE QRVEKVARST NDVLASLFAL MNQCAESGTV QAEQQRLLRA
1001: IDLFFQESSR REQQCYVTAT SPPQRQDTTM PGDSGPRQGR PSVNTSGSEW IRIRPE
0101: IGFSTLLPVL HYVAEIPFHP VQSHVLRLVW ICMVNCSGIL SMPQEEQIAC TLTAILRRNV NGELDMSSET FILVCSILIE ILKSPHAHDI EKLPSFIEEA
0201: SKYAISSTLS HECDSMILIL HSLLLLKEAL IFCLEGSKYS IASTKDLEDS IMGTCGTILL QWLQSAVVDG NDEETLAEIL QIFQIILSRA SDKKPLKFAE
0301: LLASSSWFSL SFGFMGLFPT DRVKSVVYLV TSSIVDRVLG CNYGETIRDA HIYLPSDPTE MMYLLGQCST EDFNLASCQC AILSILYACS FYNERLCANN
0401: QILASVEQYI LLNGGNFPYE INGSIMLTLL VHLYAFVRGI SYSCSIPYSP EAENTLFHLI IHKDWDLLVT RVHSVAIKWL FQKQEIVEPL AFQMLKFCKT
0501: FCEDETVMLS NSSQSVDIQM ISELVLSGET TISSLLVSLL DQMVKEGTED EVFSVVSVIA EILMISPRSS DQFISCGIVG SFHGIYCLPY SSSSRTVCSY
0601: LIFNILRSAS ASTFGQEDEW LPLALKLLEF ITSGIDYTSS GQEHKIVVGI LCLVLHHSSS EFLIEPAKAI ILNSSLVSLT DAIVNKACVK GPSLFQHNQE
0701: TTFGEFLILV LLLAFFSLRS LHTILEASID WQDFLQHSDD VQSFSVLGIP CHDLCRLMHF GSPSIKLIAS QCLLELLKRI SDQRSCIDAE LRCSTKYLKS
0801: IIAVTEGLLF SEDSKVAGNC SACLSVILGW EKFGSQEKVA VRESKWFRLI MEEFVVALTA PGLTSKSFTS QQKFAAIIAV SLLRLSQVPD WLTSLFDGHL
0901: ISGIVANLSA RNVTAEIVIL FSELMARKYL SQEHIVDLHN LFQVCRRQVY EGSSKAALPE QRVEKVARST NDVLASLFAL MNQCAESGTV QAEQQRLLRA
1001: IDLFFQESSR REQQCYVTAT SPPQRQDTTM PGDSGPRQGR PSVNTSGSEW IRIRPE
0001: MFFQHSQLQN SDHLLHESMA DSNHQSLSPP CANGHRSTIS LRDDQGGTFC LICFSNLVSD PRIPTVHVSY ALHQLSIAIS EPIFLRTLLS SHIHFLVSPL
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
Arabidopsis Description
PRD1Protein PRD1 [Source:UniProtKB/Swiss-Prot;Acc:O23277]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.