Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d046970_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14180.1 | Zm00001d046970_P002 | AT4G14180.1 | 17762870 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU76853 | Sorghum | plasma membrane | 70.11 | 86.17 |
| Os04t0347700-01 | Rice | extracellular, plasma membrane | 12.25 | 76.08 |
| TraesCS2A01G275100.2 | Wheat | plastid | 71.8 | 72.64 |
| HORVU2Hr1G067040.5 | Barley | extracellular, plasma membrane | 64.1 | 71.54 |
| TraesCS2B01G292600.1 | Wheat | plastid | 8.09 | 70.0 |
| TraesCS2D01G274100.1 | Wheat | mitochondrion | 71.73 | 68.36 |
| Os04t0347800-01 | Rice | endoplasmic reticulum, vacuole | 20.96 | 63.85 |
| GSMUA_Achr5P00720_001 | Banana | nucleus | 44.45 | 43.95 |
| VIT_05s0062g00140.t01 | Wine grape | cytosol | 39.21 | 40.56 |
| PGSC0003DMT400063222 | Potato | endoplasmic reticulum, extracellular, vacuole | 10.71 | 39.04 |
| KRH31552 | Soybean | cytosol | 38.06 | 38.24 |
| AT4G14180.1 | Thale cress | cytosol, nucleus, plasma membrane, plastid | 36.83 | 35.94 |
| Solyc03g114040.2.1 | Tomato | cytosol, nucleus, plasma membrane, plastid | 36.36 | 35.2 |
| CDY05132 | Canola | cytosol, nucleus, plasma membrane | 35.59 | 34.61 |
| CDX90779 | Canola | cytosol | 35.13 | 34.18 |
| Bra000733.1-P | Field mustard | plasma membrane | 30.89 | 33.28 |
Protein Annotations
| EnsemblPlants:Zm00001d046970_P002 | EnsemblPlants:Zm00001d046970_T002 | EnsemblPlantsGene:Zm00001d046970 | PANTHER:PTHR36379 | ProteinID:AQL05273.1 | SEG:seg |
| UniParc:UPI0008433B1F | UniProt:A0A1D6P5Q4 | MapMan:13.3.6.2.2 | : | : | : |
Description
No Description!
Coordinates
chr9:-:113511036..113519129
Molecular Weight (calculated)
142473.0 Da
IEP (calculated)
5.195
GRAVY (calculated)
0.256
Length
1298 amino acids
Sequence
(BLAST)
(BLAST)
0001: MESDGDTSPP RPPTPAPVRA CGAGHPASHS LPTSAGGRVC LSCVVALLSS AGNASTPSHH VAHALANLSL ALADPAFLRP LRAAHPHLLA APLAEALEGA
0101: AERRDAALAA QACDVAADLA AVVGAPADSE LVARLARVLS SGSLVKHLHT LHCLGLLLNS TKDAGAYIGD KCSLFLNLVN DLRLPSDEIR GEILFVLYKL
0201: ALLNATPWDD ICETGDLDLL AIGRSLLQLS LEVLLKTQND AVRLNCIALL LTLAKKEPFD HLLISNQSSN KCIEAESMQT DYMSLNASLV LFAEAVKGSL
0301: LSTNLEVQAG TLDLIFHFLS SDANICALLQ TLIDENVADY IFEVLRLSGN NDLLVISSIR VLLLFARSEE NFKEKLAIGF STLLPVLHYV AEIPFHPVQS
0401: HVLRLVWICM ANCSGILSLP QEEQIACTLT AILRRNLNGE LDMSSETFIL VCSILIEILK SPHAHDIEKL PSFIEEASKY AISSTLSHGY DSTILSTHSL
0501: LLLKEALIFC LEGSKYNIAR TKDLEDSIMG TCGTILLQWL ESAVVDGNDE ETLAEILQIF QIILSRASDK KPLKFAELLA SSSWFSLSFG FMGLFPTDHV
0601: KSLVCLVTSL IVDRLLGCNY GETIRDAHIY LPSDPTEMMY LLGQCSTEDF NLASCQCAIL SILYACSFYN ERLCANNQIL ASVEQYILLN GGTFPYEING
0701: SIMLTLLVHL YAFIRGLSHS CSIPHSPEAE NTLFHLIIHK DWDLLVIRVH SVAIKWLFQK QEIMEPLAFQ MLKFCRTFCE DETVMLSNSS QLVDMQMIAE
0801: LALSGETTIS SLLVSLLDQM LKEGTEDELF SVVSVIAEIL MISPCSSDQF ISCANASTFG QEDEWLPLVL KLLEFISSGI DYTSSGQEHK IVVGILCLVL
0901: HHSSSNFLIE PAKAIILNSS LVSLTDVVVN NACVKGPSLF QHNQETTFGE FLILVLLLVF FSLRSLHSIL EVSIDWQDFL QHSDDVQSFS VLGIPCHDLC
1001: RLMHFGSPSI KLIASQCLLE LLTRISDQRS CNNAELRCSV GYLKSIIAVT EGLVFSEDSK VAGNCSACLS VILGWEKFGS QEKVAVRESK WFRLIMEEFV
1101: VALTAPGLTS KSFSSQQKFA ANMAVSLLRL SQVPDWLTSL FDGHLISGIV ANLSARNVTA EIINLFSELM ARKYLSQEHI VDLHNLLQVC RSQVYEGSSK
1201: APLPEQRVEK VARSTNDVLA SLFGLMVNQC TDSGTAQAEQ QRLLHAIDVF FQESGRRQQQ HATARQETVP GDYGPRQGSR ARRPKEKISG PGWIRIRH
0101: AERRDAALAA QACDVAADLA AVVGAPADSE LVARLARVLS SGSLVKHLHT LHCLGLLLNS TKDAGAYIGD KCSLFLNLVN DLRLPSDEIR GEILFVLYKL
0201: ALLNATPWDD ICETGDLDLL AIGRSLLQLS LEVLLKTQND AVRLNCIALL LTLAKKEPFD HLLISNQSSN KCIEAESMQT DYMSLNASLV LFAEAVKGSL
0301: LSTNLEVQAG TLDLIFHFLS SDANICALLQ TLIDENVADY IFEVLRLSGN NDLLVISSIR VLLLFARSEE NFKEKLAIGF STLLPVLHYV AEIPFHPVQS
0401: HVLRLVWICM ANCSGILSLP QEEQIACTLT AILRRNLNGE LDMSSETFIL VCSILIEILK SPHAHDIEKL PSFIEEASKY AISSTLSHGY DSTILSTHSL
0501: LLLKEALIFC LEGSKYNIAR TKDLEDSIMG TCGTILLQWL ESAVVDGNDE ETLAEILQIF QIILSRASDK KPLKFAELLA SSSWFSLSFG FMGLFPTDHV
0601: KSLVCLVTSL IVDRLLGCNY GETIRDAHIY LPSDPTEMMY LLGQCSTEDF NLASCQCAIL SILYACSFYN ERLCANNQIL ASVEQYILLN GGTFPYEING
0701: SIMLTLLVHL YAFIRGLSHS CSIPHSPEAE NTLFHLIIHK DWDLLVIRVH SVAIKWLFQK QEIMEPLAFQ MLKFCRTFCE DETVMLSNSS QLVDMQMIAE
0801: LALSGETTIS SLLVSLLDQM LKEGTEDELF SVVSVIAEIL MISPCSSDQF ISCANASTFG QEDEWLPLVL KLLEFISSGI DYTSSGQEHK IVVGILCLVL
0901: HHSSSNFLIE PAKAIILNSS LVSLTDVVVN NACVKGPSLF QHNQETTFGE FLILVLLLVF FSLRSLHSIL EVSIDWQDFL QHSDDVQSFS VLGIPCHDLC
1001: RLMHFGSPSI KLIASQCLLE LLTRISDQRS CNNAELRCSV GYLKSIIAVT EGLVFSEDSK VAGNCSACLS VILGWEKFGS QEKVAVRESK WFRLIMEEFV
1101: VALTAPGLTS KSFSSQQKFA ANMAVSLLRL SQVPDWLTSL FDGHLISGIV ANLSARNVTA EIINLFSELM ARKYLSQEHI VDLHNLLQVC RSQVYEGSSK
1201: APLPEQRVEK VARSTNDVLA SLFGLMVNQC TDSGTAQAEQ QRLLHAIDVF FQESGRRQQQ HATARQETVP GDYGPRQGSR ARRPKEKISG PGWIRIRH
0001: MFFQHSQLQN SDHLLHESMA DSNHQSLSPP CANGHRSTIS LRDDQGGTFC LICFSNLVSD PRIPTVHVSY ALHQLSIAIS EPIFLRTLLS SHIHFLVSPL
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
0101: VHALSSIDDA PIAIQIMDMI SLLCSVEESS IGEDFVERIS DQLSSGALGW SRRQLHMLHC FGVLMSCENI NINSHIRDKE ALVCQLVEGL QLPSEEIRGE
0201: ILFALYKFSA LQFTEQNVDG IEVLSLLCPK LLCLSLEALA KTQRDDVRLN CVALLTILAQ QGLLANSHSN SASSMSLDEV DDDPMQTAEN VAARPCLNVL
0301: FAEAIKGPLL STDSEVQIKT LDLIFHYISQ ESTPSKQIQV MVEENVADYI FEILRLSECK DQVVNSCLRV LDLFSLAEHS FRKRLVIGFP SVIRVLHYVG
0401: EVPCHPFQIQ TLKLISSCIS DFPGIASSSQ VQEIALVLKK MLERYYSQEM GLFPDAFAII CSVFVSLMKT PSFGETADVL TSLQESLRHS ILASLSLPEK
0501: DSTQILHAVY LLNEVYVYCT ASTSINKTIC IELRHCVIDV CTSHLLPWFL SDVNEVNEEA TLGIMETFHS ILLQNSDIQA KEFAELLVSA DWFSFSFGCL
0601: GNFCTDNMKQ RIYLMLSSLV DILLEQKTGS HIRDALHCLP SDPQDLLFLL GQASSNNQEL ASCQSAALLI FHTSSIYNDR LADDKLVLAS LEQYIILNKT
0701: SLICAISDSP ALLNLVNLYG LCRSLQNERY QISYSLEAER IIFHLLNEYE WDLGSINIHL ESLKWLFQQE SISKSLIYQI QKISRNNLIG NEVHNVYGDG
0801: RQRSLTYWFA KLISEGDNYA ATLLVNLLTQ LAEKEEQEND VISILNLMNT IVSIFPTASN NLSMNGIGSV IHRLVSGFSN SSLGTSFRTL LLLVFNILTS
0901: VQPAVLMIDE SWYAVSIKLL NFLSLRDTAI KQNHEDMVVI GILSLVLYHS SDGALVEASR NIVSNSYLVS AINTVVDVAC SKGPALTQCQ DETNIGEALA
1001: FTLLLYFFSL RSLQIVLAGA VDWQTFFGTS TSLETLPVVC IHCHNLCRLM HFGAPQIKLI ASYCLLELLT GLSEQVDIKK EQLQCSSSYL KSMKAVLGGL
1101: VFCDDIRVAT NSALCLSMIL GWEDMEGRTE MLKTSSWYRF IAEEMSVSLA MPCSASSTYV NHHKPAVYLT VAMLRLKNKP VWLRTVFDES CISSMIQNLN
1201: GINISREIVI LFRELMQAEL LNSQQVTKLD RAFQECRKQM HRNGTRDETV EEQVQRKIPS IHDHSEFCNY LVHLMVSNSF GHPSESETYT QKKKQILDEM
1301: EQFSELISTR EGRVSPIQEE TRQMQTERIV
Arabidopsis Description
PRD1Protein PRD1 [Source:UniProtKB/Swiss-Prot;Acc:O23277]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.