CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90779
CDY05132

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13170.1	CDX90779	AT4G14180.1	17762870
AT3G13170.1	CDY05132	AT4G14180.1	17762870

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43366	Canola	cytosol	98.89	98.89
AT3G13170.1	Thale cress	cytosol	88.67	88.67
VIT_19s0015g00280.t01	Wine grape	cytosol	72.93	73.13
KRH73898	Soybean	cytosol	68.51	67.57
Solyc07g065440.2.1	Tomato	nucleus	26.8	65.99
GSMUA_Achr10P...	Banana	nucleus	19.61	64.55
PGSC0003DMT400057070	Potato	mitochondrion	32.04	63.04
Os03t0752200-01	Rice	nucleus	56.91	54.07
EER93438	Sorghum	nucleus	56.63	53.52
TraesCS5B01G396300.1	Wheat	nucleus	56.63	53.11
TraesCS5D01G401100.1	Wheat	nucleus	56.35	52.71
GSMUA_Achr10P...	Banana	plasma membrane	26.8	52.15
TraesCS5A01G391400.2	Wheat	nucleus	56.63	51.38
Solyc07g065430.2.1	Tomato	cytosol	38.12	36.03
CDX70343	Canola	nucleus	33.15	28.1
CDY10421	Canola	nucleus	32.87	27.87
CDY34392	Canola	cytosol, nucleus, peroxisome	26.24	25.0
CDY25553	Canola	cytosol, nucleus, peroxisome	26.24	25.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.2.1.1	Gene3D:3.40.1360.10	GO:A0A078GGC9	UniProt:A0A078GGC9	EnsemblPlants:CDY24207
ProteinID:CDY24207	ProteinID:CDY24207.1	GO:GO:0000166	GO:GO:0000737	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00026308001	InterPro:IPR036388	InterPro:Meiotic_Spo11	PFAM:PF04406
PRINTS:PR01550	PRINTS:PR01551	PANTHER:PTHR10848	PANTHER:PTHR10848:SF3	SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A
InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	UniParc:UPI0004EF33B2	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

BnaC01g37870DBnaC01g37870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGC9]

Coordinates

chrLK032155:+:261639..264185

Molecular Weight (calculated)

41872.0 Da

IEP (calculated)

6.952

GRAVY (calculated)

-0.167

Length

362 amino acids

Sequence
(BLAST)

001: MEGNFQISET TNLLRKIKEF TRSIVEDLAE GKSPEIAINR FRNYCNDPEA DCFCSSDEPK GREILTLRKR SQTYRIDMLL RVLLIVQQLL QENRHGSKRD
101: IYYMHPSAFK AQSVVDRAIA DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLS SLSTAFPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV VTGRGYPDVS TRRFLRLLME KLQLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP EMKWLGAFPS DSEIYGVPQQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRSEGS FH

Best Arabidopsis Sequence Match ( AT3G13170.1 )
(BLAST)

001: MEGKFAISES TNLLQRIKDF TQSVVVDLAE GRSPKISINQ FRNYCMNPEA DCLCSSDKPK GQEIFTLKKE PQTYRIDMLL RVLLIVQQLL QENRHASKRD
101: IYYMHPSAFK AQSIVDRAIG DICILFQCSR YNLNVVSVGN GLVMGWLKFR EAGRKFDCLN SLNTAYPVPV LVEEVEDIVS LAEYILVVEK ETVFQRLAND
201: MFCKTNRCIV ITGRGYPDVS TRRFLRLLME KLHLPVHCLV DCDPYGFEIL ATYRFGSMQM AYDIESLRAP DMKWLGAFPS DSEVYSVPKQ CLLPLTEEDK
301: KRTEAMLLRC YLKREMPQWR LELETMLKRG VKFEIEALSV HSLSFLSEVY IPSKIRREVS SP

Arabidopsis Description

SPO11-1Meiotic recombination protein SPO11-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.