CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY06380
CDY19605

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63990.1	CDY06380	AT3G20780.1	11410368
AT1G63990.1	CDY19605	AT3G20780.1	11410368

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34392	Canola	cytosol, nucleus, peroxisome	98.42	98.42
Bra027674.1-P	Field mustard	cytosol, nucleus, peroxisome	97.37	97.37
AT1G63990.1	Thale cress	cytosol, nucleus, peroxisome	90.79	90.08
KRH27888	Soybean	nucleus, plasma membrane, plastid	72.89	72.51
VIT_02s0025g00410.t01	Wine grape	nucleus, peroxisome, plastid	72.37	72.18
Solyc08g081590.1.1	Tomato	nucleus	43.68	66.14
KXG24464	Sorghum	cytoskeleton, cytosol, nucleus, plastid	63.16	62.83
Os08t0156900-01	Rice	cytosol	63.16	62.34
TraesCS7B01G201200.1	Wheat	cytosol	62.89	61.92
TraesCS7D01G296000.2	Wheat	nucleus	62.89	61.92
TraesCS7A01G300300.1	Wheat	nucleus	57.89	61.28
HORVU7Hr1G071060.1	Barley	cytosol, nucleus	63.16	59.11
Zm00001d049550_P001	Maize	cytosol	54.21	57.54
PGSC0003DMT400031764	Potato	cytosol, nucleus, plastid	30.79	54.67
GSMUA_AchrUn_...	Banana	plasma membrane	62.37	39.9
CDY10421	Canola	nucleus	30.79	27.4
CDX70343	Canola	nucleus	30.79	27.4
CDY24207	Canola	cytosol	25.0	26.24
CDY43366	Canola	cytosol	25.0	26.24

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.2.1.1	Gene3D:3.40.1360.10	GO:A0A078GLT6	UniProt:A0A078GLT6	EnsemblPlants:CDY25553
ProteinID:CDY25553	ProteinID:CDY25553.1	GO:GO:0000166	GO:GO:0000737	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00032810001	InterPro:IPR036388	InterPro:Meiotic_Spo11	PFAM:PF04406
PRINTS:PR01550	PRINTS:PR01551	PANTHER:PTHR10848	PANTHER:PTHR10848:SF1	SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A
InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	UniParc:UPI0004EEE8C2	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

BnaC09g11780DBnaC09g11780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLT6]

Coordinates

chrLK032176:-:496559..498462

Molecular Weight (calculated)

42618.9 Da

IEP (calculated)

8.244

GRAVY (calculated)

0.046

Length

380 amino acids

Sequence
(BLAST)

001: MEEDASMKFF SDQNTSYADI LPPREARARI EVSVLNLLRA LNSPDPAISD LSLINRKRSN SCVNQGILTD VSYIFLSTSF TKSSLTNAKT AKAFVRVWKV
101: MEMCFQILLQ EKRVTQRELF YKLLCDSPDL FSSQVEVNRS VQDVVALLRC SRFSLGIIAS TRGLVAGRLS LQEPGKEPVD CSACGSSGFP ISGDLNLLDS
201: TIMTSDARYI ILVEKHAIFH RLVEDRVFNH IPCVFITAKG YPDIATRIFL HRMSITFPHL PILALVDWNP AGLAILCTFK FGSIGMGLEA YRYACNVKWV
301: GLRGDDLNLI PEESLVPLKA KDSQIAKSLL SSKILQENYR EELSLMIETG KRAEIEALYC HGYNYLGKYM ATKIVQGKYI

Best Arabidopsis Sequence Match ( AT1G63990.1 )
(BLAST)

001: MEESSGLSSM KFFSDQHLSY ADILLPHEAR ARIEVSVLNL LRILNSPDPA ISDLSLINRK RSNSCINKGI LTDVSYIFLS TSFTKSSLTN AKTAKAFVRV
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD WNPAGLAILC TFKFGSIGMG LEAYRYACNV
301: KWIGLRGDDL NLIPEESLVP LKPKDSQIAK SLLSSKILQE NYIEELSLMV QTGKRAEIEA LYCHGYNYLG KYIATKIVQG KYI

Arabidopsis Description

SPO11-2Meiotic recombination protein SPO11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.