CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70343
CDY06380
CDY10421
CDY19605
CDY25553
CDY34392

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20780.1	CDY25553	AT1G63990.1	11410368
AT3G20780.1	CDY34392	AT1G63990.1	11410368
AT3G20780.1	CDY06380	AT3G20780.1	16339310
AT3G20780.1	CDY19605	AT3G20780.1	16339310
AT3G20780.1	CDX70343	AT5G02820.1	11410368
AT3G20780.1	CDY10421	AT5G02820.1	11410368
AT3G20780.1	CDX70343	AT5G02820.1	16339310
AT3G20780.1	CDY10421	AT5G02820.1	16339310

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06380	Canola	cytosol	97.08	99.55
Bra035745.1-P	Field mustard	cytosol, plastid	99.56	98.41
AT3G20780.1	Thale cress	cytosol	92.41	94.48
VIT_06s0004g01530.t01	Wine grape	nucleus	79.12	80.53
KRH23181	Soybean	nucleus	79.12	80.53
PGSC0003DMT400076882	Potato	nucleus	35.04	78.43
Solyc01g014490.2.1	Tomato	nucleus	76.64	78.12
PGSC0003DMT400031535	Potato	cytosol	9.78	72.83
PGSC0003DMT400049158	Potato	cytosol	5.4	72.55
TraesCS5D01G178400.1	Wheat	cytosol, plastid	72.99	72.46
TraesCS5A01G173900.1	Wheat	cytosol	72.99	72.46
PGSC0003DMT400076881	Potato	cytosol	42.77	71.46
EER96475	Sorghum	nucleus	72.12	71.39
Os09t0279600-01	Rice	nucleus	72.26	71.12
GSMUA_Achr1P09300_001	Banana	golgi, mitochondrion	72.26	70.41
HORVU5Hr1G053310.1	Barley	cytosol	72.85	69.6
TraesCS5B01G171400.1	Wheat	nucleus	73.14	67.98
Zm00001d019950_P001	Maize	nucleus	63.8	67.75
PGSC0003DMT400068945	Potato	cytosol, nucleus	7.3	61.73
Solyc11g028300.1.1	Tomato	cytosol	9.64	44.3
Solyc11g028340.1.1	Tomato	mitochondrion	3.94	42.19
Solyc11g028350.1.1	Tomato	mitochondrion	3.94	36.99
PGSC0003DMT400043995	Potato	mitochondrion	9.93	30.49
Solyc12g036030.1.1	Tomato	cytosol	3.8	27.08
Solyc11g028330.1.1	Tomato	cytosol	4.23	23.39

Protein Annotations

Gene3D:1.10.8.50	Gene3D:3.30.230.10	MapMan:35.1	GO:A0A078FZ35	UniProt:A0A078FZ35	EnsemblPlants:CDY19605
ProteinID:CDY19605	ProteinID:CDY19605.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003916	GO:GO:0003918	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006265	GO:GO:0008150	GO:GO:0008152	GO:GO:0009330	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016853	GO:GO:0061505	EnsemblPlantsGene:GSBRNA2T00009270001	InterPro:HATPase_C	InterPro:HATPase_C_sf
InterPro:IPR014721	InterPro:IPR036890	HAMAP:MF_00322	PFAM:PD013790	PFAM:PF02518	PFAM:PF09239
PANTHER:PTHR10871	PANTHER:PTHR10871:SF4	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SUPFAM:SSF54211	SUPFAM:SSF55874
InterPro:TopoVI_B	InterPro:TopoVI_B_transducer	UniParc:UPI0004EE17DE	SEG:seg	:	:

Description

BnaA05g20130DDNA topoisomerase 6 subunit B [Source:UniProtKB/TrEMBL;Acc:A0A078FZ35]

Coordinates

chrLK032098:+:462884..467454

Molecular Weight (calculated)

77412.3 Da

IEP (calculated)

9.830

GRAVY (calculated)

-0.490

Length

685 amino acids

Sequence
(BLAST)

001: MAGGDSPAET KKGSSKTSKN TKDSSKESTL KQKSPAEFFA ENKNIAGFDN PGKSLYTTVR ELVENALDSS ESISELPEVE VTIEEIGKSK FNSMIGLIDR
101: ERVDTKLYDD YETDKAREKR LVKEARASEI QAKNLASGKK NKEPGVSKVL KARGEASYYK VTCKDNGKGM PHDDIPNMFG RVLSGTKYGL KQTRGKFGLG
201: AKMALIWSKM STGLPIEISS SMKSQNYVTF CRLDIDIHRN IPHIHLHEKK ANKEKWHGAE IQVVIEGNWT TYRSKILHYM RQMAVITPYA QFLFRFISET
301: PEKNVTVKFT RRTDVMPPIP IETKHHPSSV DLLLIKRLVT DTSKKTLLQF LQNEFVNINK NLAARLIGEM GPDFSPGMAV KSVTSQQMVR IHQLFRQAKF
401: DDPSGDCLSP AGEYNLRLGI IKELHPDMVA THSGSAQVFE GHPFIVEAGV SVGGRDVKQA SHILLLFIHG INIFRFANRI PLLFEQGGDV VTRTALKRIN
501: WNSYKINQTQ DKIGVFVSIV STKIPFKGTG KEYIGDDISE IATAVKSAIQ QCCIQLKSKI VKRLQAREQQ ERKRSLSRYI PDATGAVYEV LKQMTEEHTK
601: KRKRYKEEET AMLEKVSKLI ITKETLKEKL AEHVEQVDYE MALEYATQSG VSEEPRENIY LQQLNPNHSN FIDLQSPTFV FRLIL

Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)

001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML

Arabidopsis Description

TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.