Factsheet for PGSC0003DMT400076882

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400031535
PGSC0003DMT400031764
PGSC0003DMT400043995
PGSC0003DMT400049158
PGSC0003DMT400068945
PGSC0003DMT400071721
PGSC0003DMT400076881
PGSC0003DMT400076882

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20780.1	PGSC0003DMT400031764	AT1G63990.1	11410368
AT3G20780.1	PGSC0003DMT400031535	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400043995	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400049158	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400068945	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400076881	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400076882	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400071721	AT5G02820.1	11410368
AT3G20780.1	PGSC0003DMT400071721	AT5G02820.1	16339310

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g014490.2.1	Tomato	nucleus	97.06	44.2
VIT_06s0004g01530.t01	Wine grape	nucleus	81.37	37.0
KRH23181	Soybean	nucleus	79.41	36.11
AT3G20780.1	Thale cress	cytosol	78.43	35.82
CDY06380	Canola	cytosol	77.12	35.33
CDY19605	Canola	cytosol, plastid	78.43	35.04
Bra035745.1-P	Field mustard	cytosol, plastid	77.78	34.34
Zm00001d019950_P001	Maize	nucleus	69.28	32.87
TraesCS5A01G173900.1	Wheat	cytosol	70.92	31.45
TraesCS5D01G178400.1	Wheat	cytosol, plastid	70.92	31.45
EER96475	Sorghum	nucleus	70.92	31.36
GSMUA_Achr1P09300_001	Banana	golgi, mitochondrion	71.9	31.29
Os09t0279600-01	Rice	nucleus	70.26	30.89
HORVU5Hr1G053310.1	Barley	cytosol	70.59	30.13
TraesCS5B01G171400.1	Wheat	nucleus	70.92	29.44
PGSC0003DMT400043995	Potato	mitochondrion	7.52	10.31
PGSC0003DMT400049158	Potato	cytosol	1.31	7.84
PGSC0003DMT400076881	Potato	cytosol	1.96	1.46
PGSC0003DMT400031535	Potato	cytosol	0.0	0.0
PGSC0003DMT400068945	Potato	cytosol, nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.230.10	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003918	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006265	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR014721	UniProt:M1CXJ6	PFAM:PD013790	PFAM:PF09239	EnsemblPlantsGene:PGSC0003DMG402029907	PGSC:PGSC0003DMG402029907
EnsemblPlants:PGSC0003DMT400076882	PANTHER:PTHR10871	PANTHER:PTHR10871:SF4	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SUPFAM:SSF54211
InterPro:TopoVI_B	InterPro:TopoVI_B_transducer	UniParc:UPI0002968533	:	:	:

Description

DNA topoisomerase 6 subunit B [Source:PGSC_GENE;Acc:PGSC0003DMG402029907]

Coordinates

chr1:-:54464726..54468268

Molecular Weight (calculated)

34679.6 Da

IEP (calculated)

9.527

GRAVY (calculated)

-0.419

Length

306 amino acids

Sequence
(BLAST)

001: MGPDFSPKMS VKSLTPQQIV RIHQLFRQAK FDDPSGDILS PAGEYNLRLG IIKELHPDMV ATFSGSAQVF EGHPFIVEAG VSVGGKDVKQ GLNVFRFANR
101: IPLLFEQGAD VVTRTAMKRI NWNSYKINQT QDKIGVFVSI VSTKIPFKGT GKEYIGDDIS EIASAVKTAI QQCCNQLKSK IVKRIHAREQ QERKRNLSKY
201: IPSATAAIYD LLKQTTIVHA SKKRRFRDDN ADLLKQVSVN SLTKDTFREK LAQHVEKVDY EMGLEYATQT GVNEEPREDI YIESLDEDKK NLIDLQSPIF
301: VFRLYH

Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)

001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML

Arabidopsis Description

TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.