Factsheet for TraesCS5B01G171400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G105600.1
TraesCS4B01G198400.1
TraesCS4D01G199200.1
TraesCS5A01G173900.1
TraesCS5B01G171400.1
TraesCS5D01G178400.1
TraesCS7A01G300300.1
TraesCS7B01G201200.1
TraesCS7D01G296000.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20780.1	TraesCS7A01G300300.1	AT1G63990.1	11410368
AT3G20780.1	TraesCS7B01G201200.1	AT1G63990.1	11410368
AT3G20780.1	TraesCS7D01G296000.2	AT1G63990.1	11410368
AT3G20780.1	TraesCS5A01G173900.1	AT3G20780.1	16339310
AT3G20780.1	TraesCS5B01G171400.1	AT3G20780.1	16339310
AT3G20780.1	TraesCS5D01G178400.1	AT3G20780.1	16339310
AT3G20780.1	TraesCS4A01G105600.1	AT5G02820.1	11410368
AT3G20780.1	TraesCS4B01G198400.1	AT5G02820.1	11410368
AT3G20780.1	TraesCS4D01G199200.1	AT5G02820.1	11410368
AT3G20780.1	TraesCS4A01G105600.1	AT5G02820.1	16339310
AT3G20780.1	TraesCS4B01G198400.1	AT5G02820.1	16339310
AT3G20780.1	TraesCS4D01G199200.1	AT5G02820.1	16339310

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G173900.1	Wheat	cytosol	93.08	99.42
TraesCS5D01G178400.1	Wheat	cytosol, plastid	92.54	98.84
HORVU5Hr1G053310.1	Barley	cytosol	92.13	94.7
Os09t0279600-01	Rice	nucleus	83.04	87.93
EER96475	Sorghum	nucleus	79.24	84.39
Zm00001d019950_P001	Maize	nucleus	70.56	80.62
VIT_06s0004g01530.t01	Wine grape	nucleus	70.28	76.97
KRH23181	Soybean	nucleus	69.74	76.37
AT3G20780.1	Thale cress	cytosol	67.98	74.78
CDY06380	Canola	cytosol	67.44	74.4
Solyc01g014490.2.1	Tomato	nucleus	67.44	73.96
GSMUA_Achr1P09300_001	Banana	golgi, mitochondrion	69.88	73.26
CDY19605	Canola	cytosol, plastid	67.98	73.14
Bra035745.1-P	Field mustard	cytosol, plastid	67.71	72.01
PGSC0003DMT400031535	Potato	cytosol	8.96	71.74
PGSC0003DMT400076882	Potato	nucleus	29.44	70.92
PGSC0003DMT400049158	Potato	cytosol	4.88	70.59
PGSC0003DMT400076881	Potato	cytosol	38.94	70.0
PGSC0003DMT400068945	Potato	cytosol, nucleus	7.06	64.2
Solyc11g028310.1.1	Tomato	cytosol, mitochondrion	5.97	57.14
Solyc11g028300.1.1	Tomato	cytosol	8.82	43.62
Solyc11g028340.1.1	Tomato	mitochondrion	3.66	42.19
Solyc11g028350.1.1	Tomato	mitochondrion	3.8	38.36
PGSC0003DMT400043995	Potato	mitochondrion	9.09	30.04
Solyc12g036030.1.1	Tomato	cytosol	3.53	27.08
Solyc11g028330.1.1	Tomato	cytosol	4.21	25.0

Protein Annotations

Gene3D:1.10.8.50	Gene3D:3.30.230.10	MapMan:35.1	GO:GO:0000166	GO:GO:0000902	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003918	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006265	GO:GO:0007049	GO:GO:0007275
GO:GO:0007389	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009719
GO:GO:0009741	GO:GO:0009987	GO:GO:0010026	GO:GO:0016043	GO:GO:0016787	GO:GO:0030154
GO:GO:0042023	GO:GO:0042802	GO:GO:0042803	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR014721
InterPro:IPR036890	HAMAP:MF_00322	PFAM:PD013790	PFAM:PF02518	PFAM:PF09239	PANTHER:PTHR10871
PANTHER:PTHR10871:SF4	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SUPFAM:SSF54211	SUPFAM:SSF55874	InterPro:TopoVI_B
InterPro:TopoVI_B_transducer	EnsemblPlantsGene:TraesCS5B01G171400	EnsemblPlants:TraesCS5B01G171400.1	TIGR:cd00075	TIGR:cd00823	SEG:seg

Description

No Description!

Coordinates

chr5B:+:315922549..315929269

Molecular Weight (calculated)

82563.0 Da

IEP (calculated)

8.819

GRAVY (calculated)

-0.476

Length

737 amino acids

Sequence
(BLAST)

001: MDQQDRLTLI ASSIPAVEPP LSPQFSPPPE PKQTLAYNPD PTEPIFAMDD SSDGGATAGG TKKKPSAAAA KGKATGKGKA TSKAVPKAKE SSLLKQKSPA
101: EFFAENKNIA GFDNPGKSLY TTMRELVENA LDSAESISEL PDIEITIEEI TKSKFNTMIG LVDRERVDEA LYDDFESSKA REKRLAKEAR FQETQAKNSA
201: LGKKVKDTPA ARGKGRGEAS FFRVTCKDNG RGMPHEDIPN MFGRVLSGTK YGLRQTRGKF GLGAKMALIW SKMSTGLPID IKSSMKGQDY ITFCRLDIDI
301: HKNVPHIHLH EKRENNDHWH GAEIQVIIEG NWTTHRSRIL HYMRQMAVIT PYAQFLFRFL SDAAEKNLTI KFARRTDVMP PVPLLTKHHP SAVDLLLIKR
401: LITDTTKPNL LQFLQHEFVN ISKAHADRLI GEMGPDFSAK TTVNSLTSQQ LVRIHQLFRQ AKFDDPSGNC LSPAGEYNLR LGIIKELHPD LVATHASSPQ
501: VFEGHPFIVE AGVSIGGKDV KQGLNIFRFA NRIPLLFEQG ADVITRTALK RINWSIYKIN QQQDKIGVFV SIVSTKIPFK GTGKEYIGDD ITEIADAVKS
601: ALKQCCVQLK SKIVKKLQAR EQQDRKRNLN KYIPDVARTI METLGELADE SPPKRPRFDK EDEELLEKIN SEEVTEMTLR DCLTQHVEQV DYEMALEYAM
701: QSGVSEEPRE AIYLNSLDGS YKFVDFQSPA FVFRFIP

Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)

001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML

Arabidopsis Description

TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.