Factsheet for Solyc11g028330.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g014490.2.1
Solyc08g081590.1.1
Solyc09g007210.2.1
Solyc11g028300.1.1
Solyc11g028330.1.1
Solyc11g028340.1.1
Solyc11g028350.1.1
Solyc12g036030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20780.1	Solyc08g081590.1.1	AT1G63990.1	11410368
AT3G20780.1	Solyc01g014490.2.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028300.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028330.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028340.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028350.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc12g036030.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc09g007210.2.1	AT5G02820.1	11410368
AT3G20780.1	Solyc09g007210.2.1	AT5G02820.1	16339310

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g028340.1.1	Tomato	mitochondrion	25.81	50.0
Solyc11g028350.1.1	Tomato	mitochondrion	26.61	45.21
Solyc11g028300.1.1	Tomato	cytosol	16.13	13.42
Solyc01g014490.2.1	Tomato	nucleus	32.26	5.95
VIT_06s0004g01530.t01	Wine grape	nucleus	28.23	5.2
Zm00001d019950_P001	Maize	nucleus	25.81	4.96
GSMUA_Achr1P09300_001	Banana	golgi, mitochondrion	27.42	4.84
TraesCS5D01G178400.1	Wheat	cytosol, plastid	25.81	4.64
TraesCS5A01G173900.1	Wheat	cytosol	25.0	4.49
AT3G20780.1	Thale cress	cytosol	24.19	4.48
CDY06380	Canola	cytosol	23.39	4.34
HORVU5Hr1G053310.1	Barley	cytosol	25.0	4.32
Os09t0279600-01	Rice	nucleus	24.19	4.31
CDY19605	Canola	cytosol, plastid	23.39	4.23
TraesCS5B01G171400.1	Wheat	nucleus	25.0	4.21
EER96475	Sorghum	nucleus	23.39	4.19
Bra035745.1-P	Field mustard	cytosol, plastid	23.39	4.18
Solyc12g036030.1.1	Tomato	cytosol	2.42	3.12
Solyc11g028310.1.1	Tomato	cytosol, mitochondrion	0.0	0.0

Protein Annotations

MapMan:35.2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003735
GO:GO:0003824	GO:GO:0003918	GO:GO:0005198	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006259	GO:GO:0006265	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787
GO:GO:0019538	GO:GO:0042254	UniProt:K4D7H2	PANTHER:PTHR10871	PANTHER:PTHR10871:SF4	EnsemblPlantsGene:Solyc11g028330.1
EnsemblPlants:Solyc11g028330.1.1	TMHMM:TMhelix	InterPro:TopoVI_B	UniParc:UPI0002769951	:	:

Description

No Description!

Coordinates

chr11:+:21205602..21211465

Molecular Weight (calculated)

14754.0 Da

IEP (calculated)

7.499

GRAVY (calculated)

0.082

Length

124 amino acids

Sequence
(BLAST)

001: MSLAEFFADN KNIVGFDNEE QRKNVLIRFT RRTYIMPSVP LENKYHTSAV DIFLMKRWAR VVEYAFGIRE YFVLLGLLGF ISMYYNLRTY PFLSFLQALI
101: WSKMSTGFPI ELVTMRDEAV YDDF

Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)

001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML

Arabidopsis Description

TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.