Factsheet for Solyc01g014490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g014490.2.1
Solyc08g081590.1.1
Solyc09g007210.2.1
Solyc11g028300.1.1
Solyc11g028330.1.1
Solyc11g028340.1.1
Solyc11g028350.1.1
Solyc12g036030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20780.1	Solyc08g081590.1.1	AT1G63990.1	11410368
AT3G20780.1	Solyc01g014490.2.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028300.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028330.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028340.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028350.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc12g036030.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc09g007210.2.1	AT5G02820.1	11410368
AT3G20780.1	Solyc09g007210.2.1	AT5G02820.1	16339310

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076882	Potato	nucleus	44.2	97.06
PGSC0003DMT400076881	Potato	cytosol	55.06	90.24
VIT_06s0004g01530.t01	Wine grape	nucleus	82.44	82.32
AT3G20780.1	Thale cress	cytosol	77.53	77.76
CDY06380	Canola	cytosol	77.23	77.69
CDY19605	Canola	cytosol, plastid	78.12	76.64
Bra035745.1-P	Field mustard	cytosol, plastid	77.83	75.47
TraesCS5A01G173900.1	Wheat	cytosol	74.26	72.32
TraesCS5D01G178400.1	Wheat	cytosol, plastid	74.11	72.17
EER96475	Sorghum	nucleus	73.66	71.53
Os09t0279600-01	Rice	nucleus	73.96	71.41
GSMUA_Achr1P09300_001	Banana	golgi, mitochondrion	73.66	70.41
HORVU5Hr1G053310.1	Barley	cytosol	74.11	69.46
Zm00001d019950_P001	Maize	nucleus	64.73	67.44
TraesCS5B01G171400.1	Wheat	nucleus	73.96	67.44
Solyc11g028310.1.1	Tomato	cytosol, mitochondrion	6.99	61.04
Solyc11g028340.1.1	Tomato	mitochondrion	5.51	57.81
Solyc11g028300.1.1	Tomato	cytosol	11.31	51.01
Solyc11g028350.1.1	Tomato	mitochondrion	5.51	50.68
Solyc11g028330.1.1	Tomato	cytosol	5.95	32.26
Solyc12g036030.1.1	Tomato	cytosol	4.46	31.25

Protein Annotations

Gene3D:1.10.8.50	Gene3D:3.30.230.10	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003735	GO:GO:0003824	GO:GO:0003916	GO:GO:0003918	GO:GO:0005198
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006259	GO:GO:0006265
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009330	GO:GO:0009987
GO:GO:0015935	GO:GO:0016043	GO:GO:0016787	GO:GO:0016853	GO:GO:0019538	GO:GO:0042254
GO:GO:0061505	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR014721	InterPro:IPR036890	UniProt:K4AU86
HAMAP:MF_00322	PFAM:PD013790	PFAM:PF02518	PFAM:PF09239	PANTHER:PTHR10871	PANTHER:PTHR10871:SF4
InterPro:Ribosomal_S13-like_H2TH	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SUPFAM:SSF46946	SUPFAM:SSF54211	SUPFAM:SSF55874
EnsemblPlantsGene:Solyc01g014490.2	EnsemblPlants:Solyc01g014490.2.1	InterPro:TopoVI_B	InterPro:TopoVI_B_transducer	UniParc:UPI0002762313	SEG:seg

Description

DNA topoisomerase 6 subunit B [Source:UniProtKB/TrEMBL;Acc:K4AU86]

Coordinates

chr1:-:13976404..13992385

Molecular Weight (calculated)

76260.5 Da

IEP (calculated)

9.854

GRAVY (calculated)

-0.520

Length

672 amino acids

Sequence
(BLAST)

001: MESGRSSESP EVAKKGKSKT PRKPKDSILK QKSPAEFFAD NKNIAGFDNP GKCLYTTVRE LVENALDSAE SISELPVVEI TIEEIGRSKF NSMIGLADHE
101: RRDEALYDDF ETAKAREKRL AKEARVLEIQ AKNASLGKKV KDPAATKAAK GREASYYRVT CKDNGRGMPH DDIPNMFGRV LSGTKYGLKQ TRGKFGLGAK
201: MALIWSKMST GLPIEITSSM NSQNYTSFCR LDIDIHKNVP HIHIHEKREN KERWHGAEIQ IVIEGNWTTY RSKILHYMRQ MAVITPYAQF LFQFVSDSPE
301: KNVTIRFTRR TDIMPSVPLE TKYHPSAVDI LLIKRLITET SKQTLLQFLQ HEFVNIGKSH AERLIGEMGP DFSPKMSVKS LTPQQIVRIH QLFRQAKFDD
401: PSGDILSPAG EYNLRLGIIK ELHPDMVATF SGSAQVFEGH PFIVEAGVSV GGKDVKQGLN VFRFANRIPL LFEQGADVVT RTAMKRINWN SYKINQTQDK
501: IGVFVSIVST KIPFKGTGKE YIGDDISEIA SAVKTAIKQC CNQLKSKIVK RIHAREQQER KRNLSKYIPS ATAAIYDLLK QTTNVHASKK RRFRDDNADL
601: LKQVSVNSLT KDTFREKLAQ HVEKVDYEMG LEYATQTGVN EEPREEIYIE SLNEDKNFLD LQSPIFVFRF YH

Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)

001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML

Arabidopsis Description

TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.