Factsheet for PGSC0003DMT400076881

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400031535
PGSC0003DMT400031764
PGSC0003DMT400043995
PGSC0003DMT400049158
PGSC0003DMT400068945
PGSC0003DMT400071721
PGSC0003DMT400076881
PGSC0003DMT400076882

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20780.1	PGSC0003DMT400031764	AT1G63990.1	11410368
AT3G20780.1	PGSC0003DMT400031535	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400043995	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400049158	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400068945	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400076881	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400076882	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400071721	AT5G02820.1	11410368
AT3G20780.1	PGSC0003DMT400071721	AT5G02820.1	16339310

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068945	Potato	cytosol, nucleus	17.07	86.42
PGSC0003DMT400031535	Potato	cytosol	19.02	84.78
PGSC0003DMT400049158	Potato	cytosol	8.05	64.71
Solyc01g014490.2.1	Tomato	nucleus	90.24	55.06
KRH23181	Soybean	nucleus	77.8	47.4
VIT_06s0004g01530.t01	Wine grape	nucleus	77.07	46.95
CDY06380	Canola	cytosol	70.98	43.56
AT3G20780.1	Thale cress	cytosol	70.98	43.43
CDY19605	Canola	cytosol, plastid	71.46	42.77
Bra035745.1-P	Field mustard	cytosol, plastid	71.46	42.28
TraesCS5A01G173900.1	Wheat	cytosol	70.24	41.74
TraesCS5D01G178400.1	Wheat	cytosol, plastid	69.76	41.45
Os09t0279600-01	Rice	nucleus	70.0	41.24
EER96475	Sorghum	nucleus	68.78	40.75
HORVU5Hr1G053310.1	Barley	cytosol	70.24	40.17
GSMUA_Achr1P09300_001	Banana	golgi, mitochondrion	68.78	40.11
TraesCS5B01G171400.1	Wheat	nucleus	70.0	38.94
Zm00001d019950_P001	Maize	nucleus	55.37	35.19
PGSC0003DMT400043995	Potato	mitochondrion	13.17	24.22
PGSC0003DMT400076882	Potato	nucleus	1.46	1.96

Protein Annotations

Gene3D:1.10.8.50	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003918	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006265	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR036890	UniProt:M1CXJ5	PFAM:PF02518	EnsemblPlantsGene:PGSC0003DMG401029907
PGSC:PGSC0003DMG401029907	EnsemblPlants:PGSC0003DMT400076881	PANTHER:PTHR10871	PANTHER:PTHR10871:SF4	SUPFAM:SSF55874	InterPro:TopoVI_B
UniParc:UPI000294CEA1	SEG:seg	:	:	:	:

Description

Type II DNA topoisomerase VI subunit B [Source:PGSC_GENE;Acc:PGSC0003DMG401029907]

Coordinates

chr1:-:54479003..54482721

Molecular Weight (calculated)

46568.4 Da

IEP (calculated)

10.007

GRAVY (calculated)

-0.443

Length

410 amino acids

Sequence
(BLAST)

001: METGRSSESP EVPKKGKSKT PRKPKDSILK QKSPAEFFAD NKNIAGFDNP GKCLYTTVRE LVENALDSAE SISELPVVEI TIEEIGRSKF NSMIGLADHE
101: RRDEALYDDF ETAKAREKRL AKEARVLEIQ AKNAALGKKV KDPAATKAAK GREASYYRVT CKDNGRGMPH DDIPNMFGRV LSGTKYGLKQ TRGKFGLGAK
201: MALIWSKMST GLPIEITSSM NSQNYTSFCR LDIDIHKNVP HIHIHEKREN KERWHGAEIQ IVIEGNWTTY RSKILHYMRQ MAVITPYAQF LFQFVSDSPE
301: YFLYLPSAPS PLSLLFPPLK NVTIRFTRRT DIMPSVPLET KYHPSAVDIL LIKRLITETS KQTLLQFLQH EFVNIGKSHA ERLIGENLKL IAFICVRFLD
401: KRKLVGSMAY

Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)

001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML

Arabidopsis Description

TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.