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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 21132161
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH19789
KRH23181
KRH27888
KRH32381

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G20780.1 KRH27888 AT1G63990.1 11410368
AT3G20780.1 KRH23181 AT3G20780.1 16339310
AT3G20780.1 KRH19789 AT5G02820.1 11410368
AT3G20780.1 KRH32381 AT5G02820.1 11410368
AT3G20780.1 KRH19789 AT5G02820.1 16339310
AT3G20780.1 KRH32381 AT5G02820.1 16339310
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_06s0004g01530.t01 Wine grape nucleus 84.55 84.55
AT3G20780.1 Thale cress cytosol 80.83 81.19
CDY06380 Canola cytosol 79.64 80.24
PGSC0003DMT400076882 Potato nucleus 36.11 79.41
CDY19605 Canola cytosol, plastid 80.53 79.12
Bra035745.1-P Field mustard cytosol, plastid 80.24 77.92
PGSC0003DMT400076881 Potato cytosol 47.4 77.8
PGSC0003DMT400031535 Potato cytosol 10.25 75.0
TraesCS5A01G173900.1 Wheat cytosol 76.52 74.64
EER96475 Sorghum nucleus 76.52 74.42
Os09t0279600-01 Rice nucleus 76.82 74.28
TraesCS5D01G178400.1 Wheat cytosol, plastid 75.93 74.06
GSMUA_Achr1P09300_001 Banana golgi, mitochondrion 76.52 73.26
PGSC0003DMT400049158 Potato cytosol 5.5 72.55
HORVU5Hr1G053310.1 Barley cytosol 76.67 71.97
Zm00001d019950_P001 Maize nucleus 67.46 70.39
TraesCS5B01G171400.1 Wheat nucleus 76.37 69.74
PGSC0003DMT400068945 Potato cytosol, nucleus 8.32 69.14
Solyc11g028310.1.1 Tomato cytosol, mitochondrion 6.54 57.14
PGSC0003DMT400043995 Potato mitochondrion 9.81 29.6
Protein Annotations
Gene3D:1.10.8.50EntrezGene:100809558Gene3D:3.30.230.10MapMan:35.1EMBL:ACUP02008457ncoils:Coil
EnsemblPlantsGene:GLYMA_13G342900GO:GO:0000166GO:GO:0000902GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003735GO:GO:0003824GO:GO:0003916GO:GO:0003918GO:GO:0005198GO:GO:0005488
GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006139GO:GO:0006259GO:GO:0006265
GO:GO:0006412GO:GO:0007049GO:GO:0007275GO:GO:0007389GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009330GO:GO:0009653GO:GO:0009719GO:GO:0009741GO:GO:0009987
GO:GO:0010026GO:GO:0015935GO:GO:0016043GO:GO:0016787GO:GO:0016853GO:GO:0019538
GO:GO:0030154GO:GO:0042023GO:GO:0042254GO:GO:0042802GO:GO:0042803GO:GO:0061505
InterPro:HATPase_CInterPro:HATPase_C_sfUniProt:I1M541InterPro:IPR014721InterPro:IPR036890EnsemblPlants:KRH23181
ProteinID:KRH23181ProteinID:KRH23181.1HAMAP:MF_00322PFAM:PD013790PFAM:PF02518PFAM:PF09239
PANTHER:PTHR10871PANTHER:PTHR10871:SF4InterPro:Ribosomal_S13-like_H2THInterPro:Ribosomal_S5_D2-typ_foldInterPro:Ribosomal_S5_D2-typ_fold_subgrSUPFAM:SSF46946
SUPFAM:SSF54211SUPFAM:SSF55874InterPro:TopoVI_BInterPro:TopoVI_B_transducerUniParc:UPI000233B0DBSEG:seg
Description
hypothetical protein
Coordinates
chr13:-:43437455..43443980
Molecular Weight (calculated)
76097.7 Da
IEP (calculated)
9.632
GRAVY (calculated)
-0.478
Length
673 amino acids
Sequence
(BLAST)
001: MDGDGSSESP IETKKAKSKT PRKPKETILK QKSPAEFFAE NKNIAGFDNP GKSLYTTVRE LVENSLDSAE SISELPVVEI TIEEIGKSKF NSMIGLVDRE
101: RVDAALYDDY ETEKAREKRL AKEARAQEMQ AKNAALGKKV KDTPASKAIK GRGEASFYRV TCKDNGKGMP HDDIPNMFGR VLSGTKYGLK QTRGKFGLGA
201: KMALIWSKMS TGLPIEITSS MKNQNYVSFC RLDIDIHKNI PHVHLHEKRE NKEHWRGAEI QVVIEGNWTT YRSKILHYMR QMAVITPYAQ FLFKFVSDAP
301: DKNVSIRFAR RTDVMPPIPM ETKHHPSSVD LLLIKRLIAE TSKQNLLQFL QHEFVNISKS YAERLIGEMG PDFGSKMTVK SLTSQQLVRI HQLLRQAKFD
401: DPSGHCLSPA GEYNLRLGII KELHPDMVAT YSGSAQVFEG HPFIVEAGVS VGGKNVKQGL NIFRFANRIP LLFEQGADVV TRTAHKRINW SSYKINQMQD
501: KIGVFVSIVS TKIPFKGTGK EYIGDDITEI ASAVKYAIQQ CCVQLKSKIV KKMHAREQQE RKRNLSRYIP DASGAVYNVL KEMTQLHASK KIRYGDDDAE
601: LLSKVSENLI TKETLCEKLS KHVEQVDYEM ALEYATQSGV SEEPRETIYI QSLEAENKMI DLQTPFIVFR VFQ
Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)
001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML
Arabidopsis Description
TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.