Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KRH23181 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G63990.1 | KRH23181 | AT3G20780.1 | 11410368 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0025g00410.t01 | Wine grape | nucleus, peroxisome, plastid | 76.44 | 76.64 |
| AT1G63990.1 | Thale cress | cytosol, nucleus, peroxisome | 74.08 | 73.89 |
| CDY34392 | Canola | cytosol, nucleus, peroxisome | 73.04 | 73.42 |
| Bra027674.1-P | Field mustard | cytosol, nucleus, peroxisome | 72.77 | 73.16 |
| CDY25553 | Canola | cytosol, nucleus, peroxisome | 72.51 | 72.89 |
| Solyc08g081590.1.1 | Tomato | nucleus | 45.55 | 69.32 |
| TraesCS7D01G296000.2 | Wheat | nucleus | 64.14 | 63.47 |
| TraesCS7B01G201200.1 | Wheat | cytosol | 63.87 | 63.21 |
| KXG24464 | Sorghum | cytoskeleton, cytosol, nucleus, plastid | 63.09 | 63.09 |
| Os08t0156900-01 | Rice | cytosol | 62.04 | 61.56 |
| TraesCS7A01G300300.1 | Wheat | nucleus | 57.59 | 61.28 |
| PGSC0003DMT400031764 | Potato | cytosol, nucleus, plastid | 34.03 | 60.75 |
| HORVU7Hr1G071060.1 | Barley | cytosol, nucleus | 64.14 | 60.34 |
| Zm00001d049550_P001 | Maize | cytosol | 54.71 | 58.38 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 67.28 | 43.27 |
| KRH32381 | Soybean | nucleus | 29.32 | 26.73 |
| KRH19789 | Soybean | nucleus | 29.06 | 26.62 |
| KRH73898 | Soybean | cytosol | 23.82 | 24.8 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:100784732 | MapMan:13.3.6.2.1.1 | Gene3D:3.40.1360.10 | EMBL:ACUP02006735 | EnsemblPlantsGene:GLYMA_11G021300 |
| GO:GO:0000003 | GO:GO:0000166 | GO:GO:0000228 | GO:GO:0000706 | GO:GO:0000737 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003918 | GO:GO:0004518 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006950 | GO:GO:0007049 | GO:GO:0007131 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009553 | GO:GO:0009555 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016889 | GO:GO:0042138 | GO:GO:0048316 |
| GO:GO:0051026 | GO:GO:0051321 | InterPro:IPR036388 | UniProt:K7LMM4 | EnsemblPlants:KRH27888 | ProteinID:KRH27888 |
| ProteinID:KRH27888.1 | PFAM:PF04406 | PRINTS:PR01550 | PANTHER:PTHR10848 | PANTHER:PTHR10848:SF1 | SUPFAM:SSF56726 |
| InterPro:Spo11/TopoVI_A | InterPro:Spo11/TopoVI_A_N | InterPro:Spo11/TopoVI_A_sf | InterPro:TOPRIM_Topo6A/Spo11 | UniParc:UPI000233C85C | InterPro:WH-like_DNA-bd_sf |
Description
hypothetical protein
Coordinates
chr11:+:1512657..1515641
Molecular Weight (calculated)
43109.8 Da
IEP (calculated)
9.116
GRAVY (calculated)
0.116
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDLRNLTLK FFSDQELCYA DIVPLAQVRA RIEVSVLNFL KILNASSPAI SDLPLIQRKY SNSRVNHGLL TELSRVFLSN SVSTRSLMRP NAAKAFVRVW
101: KVMEMCYQIL LQEKRVTQRE LFYKLLCDSP HLFPSQTHVN RTIQDLVALL RCSRFSLGIM ASSRGLVAGR LILQEPGKEA VDCSLCGSSG FAISGDLNLL
201: DSLVLNADAR YVIIVEKHAI FQRLTEDRFF HQIPSILITA KGYPDIATRF LLYRISKAFP DLPILALVDW NPAGLAILCT FKFGSIGMGL EAYRYACNVK
301: WLGLRGHDLP LLPNQSFVPL KPKDLQIAQS LMSSGILQDN YKEEVALMVQ SGRRAEIEAL YFNGYDYLGK YIAKKIVQSD YV
101: KVMEMCYQIL LQEKRVTQRE LFYKLLCDSP HLFPSQTHVN RTIQDLVALL RCSRFSLGIM ASSRGLVAGR LILQEPGKEA VDCSLCGSSG FAISGDLNLL
201: DSLVLNADAR YVIIVEKHAI FQRLTEDRFF HQIPSILITA KGYPDIATRF LLYRISKAFP DLPILALVDW NPAGLAILCT FKFGSIGMGL EAYRYACNVK
301: WLGLRGHDLP LLPNQSFVPL KPKDLQIAQS LMSSGILQDN YKEEVALMVQ SGRRAEIEAL YFNGYDYLGK YIAKKIVQSD YV
001: MEESSGLSSM KFFSDQHLSY ADILLPHEAR ARIEVSVLNL LRILNSPDPA ISDLSLINRK RSNSCINKGI LTDVSYIFLS TSFTKSSLTN AKTAKAFVRV
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD WNPAGLAILC TFKFGSIGMG LEAYRYACNV
301: KWIGLRGDDL NLIPEESLVP LKPKDSQIAK SLLSSKILQE NYIEELSLMV QTGKRAEIEA LYCHGYNYLG KYIATKIVQG KYI
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD WNPAGLAILC TFKFGSIGMG LEAYRYACNV
301: KWIGLRGDDL NLIPEESLVP LKPKDSQIAK SLLSSKILQE NYIEELSLMV QTGKRAEIEA LYCHGYNYLG KYIATKIVQG KYI
Arabidopsis Description
SPO11-2Meiotic recombination protein SPO11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A1]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.