Factsheet for TraesCS7D01G296000.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G173900.1
TraesCS5B01G171400.1
TraesCS5D01G178400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63990.1	TraesCS5A01G173900.1	AT3G20780.1	11410368
AT1G63990.1	TraesCS5B01G171400.1	AT3G20780.1	11410368
AT1G63990.1	TraesCS5D01G178400.1	AT3G20780.1	11410368

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G201200.1	Wheat	cytosol	97.67	97.67
TraesCS7A01G300300.1	Wheat	nucleus	87.31	93.87
HORVU7Hr1G071060.1	Barley	cytosol, nucleus	97.15	92.36
KXG24464	Sorghum	cytoskeleton, cytosol, nucleus, plastid	87.56	88.48
Os08t0156900-01	Rice	cytosol	85.23	85.45
Zm00001d049550_P001	Maize	cytosol	73.58	79.33
VIT_02s0025g00410.t01	Wine grape	nucleus, peroxisome, plastid	65.54	66.4
KRH27888	Soybean	nucleus, plasma membrane, plastid	63.47	64.14
Bra027674.1-P	Field mustard	cytosol, nucleus, peroxisome	62.69	63.68
CDY34392	Canola	cytosol, nucleus, peroxisome	62.69	63.68
AT1G63990.1	Thale cress	cytosol, nucleus, peroxisome	62.95	63.45
CDY25553	Canola	cytosol, nucleus, peroxisome	61.92	62.89
Solyc08g081590.1.1	Tomato	nucleus	39.38	60.56
PGSC0003DMT400031764	Potato	cytosol, nucleus, plastid	26.68	48.13
GSMUA_AchrUn_...	Banana	plasma membrane	70.21	45.62
TraesCS4D01G199200.1	Wheat	nucleus, plastid	31.35	27.44
TraesCS5D01G401100.1	Wheat	nucleus	23.58	23.51
TraesCS3D01G170600.1	Wheat	cytosol	21.5	20.7

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.2.1.1	Gene3D:3.40.1360.10	GO:GO:0000003	GO:GO:0000166	GO:GO:0000737
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259
GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009553
GO:GO:0009555	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0048316	GO:GO:0051026
GO:GO:0051321	InterPro:IPR036388	InterPro:Meiotic_Spo11	PFAM:PF04406	PRINTS:PR01550	PRINTS:PR01551
PANTHER:PTHR10848	PANTHER:PTHR10848:SF1	SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf
InterPro:TOPRIM_Topo6A/Spo11	EnsemblPlantsGene:TraesCS7D01G296000	EnsemblPlants:TraesCS7D01G296000.2	InterPro:WH-like_DNA-bd_sf	TIGR:cd00223	SEG:seg

Description

No Description!

Coordinates

chr7D:+:371787908..371790787

Molecular Weight (calculated)

43300.7 Da

IEP (calculated)

8.462

GRAVY (calculated)

0.020

Length

386 amino acids

Sequence
(BLAST)

001: MAQAEADVPA TSLFGADRRL CSADVLSPLE VRARIEVAVL NFLATLSSPS SPAIPVLPLI SRKSTNCSLR SGLLSDVSSV YLSYAFCKRS LMRENDAKAF
101: VRVWKVMEMC YKILGEGKLV TQRELFYKLL SDSPKYFSCQ RHVNQTIQDV VSLLRCTRQS LGIMASSRGA LIGRLVLHEP EEEHIDCSIL GPSGHAITGD
201: LNQLSRLNLS SDARYLILVE KDAIFQRLAE DRLYNQLPCI LITAKGYPDI ATRFILHRLS QTFPNMPIFA LVDWNPAGLS ILCTYKYGSI SMGLESYRYA
301: CNVKWLGLRG DDLQLIPQSA FQELKPRDLQ IAKSLLSSKF LQDTHRAELT RMVETGTRAE IEALYCHGFD FLGKFIARKI VQGDYI

Best Arabidopsis Sequence Match ( AT1G63990.1 )
(BLAST)

001: MEESSGLSSM KFFSDQHLSY ADILLPHEAR ARIEVSVLNL LRILNSPDPA ISDLSLINRK RSNSCINKGI LTDVSYIFLS TSFTKSSLTN AKTAKAFVRV
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD WNPAGLAILC TFKFGSIGMG LEAYRYACNV
301: KWIGLRGDDL NLIPEESLVP LKPKDSQIAK SLLSSKILQE NYIEELSLMV QTGKRAEIEA LYCHGYNYLG KYIATKIVQG KYI

Arabidopsis Description

SPO11-2Meiotic recombination protein SPO11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.