Factsheet for TraesCS5D01G178400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G105600.1
TraesCS4B01G198400.1
TraesCS4D01G199200.1
TraesCS5A01G173900.1
TraesCS5B01G171400.1
TraesCS5D01G178400.1
TraesCS7A01G300300.1
TraesCS7B01G201200.1
TraesCS7D01G296000.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20780.1	TraesCS7A01G300300.1	AT1G63990.1	11410368
AT3G20780.1	TraesCS7B01G201200.1	AT1G63990.1	11410368
AT3G20780.1	TraesCS7D01G296000.2	AT1G63990.1	11410368
AT3G20780.1	TraesCS5A01G173900.1	AT3G20780.1	16339310
AT3G20780.1	TraesCS5B01G171400.1	AT3G20780.1	16339310
AT3G20780.1	TraesCS5D01G178400.1	AT3G20780.1	16339310
AT3G20780.1	TraesCS4A01G105600.1	AT5G02820.1	11410368
AT3G20780.1	TraesCS4B01G198400.1	AT5G02820.1	11410368
AT3G20780.1	TraesCS4D01G199200.1	AT5G02820.1	11410368
AT3G20780.1	TraesCS4A01G105600.1	AT5G02820.1	16339310
AT3G20780.1	TraesCS4B01G198400.1	AT5G02820.1	16339310
AT3G20780.1	TraesCS4D01G199200.1	AT5G02820.1	16339310

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G173900.1	Wheat	cytosol	99.42	99.42
HORVU5Hr1G053310.1	Barley	cytosol	98.41	94.7
TraesCS5B01G171400.1	Wheat	nucleus	98.84	92.54
Os09t0279600-01	Rice	nucleus	88.41	87.64
EER96475	Sorghum	nucleus	84.64	84.39
Zm00001d019950_P001	Maize	nucleus	75.65	80.93
VIT_06s0004g01530.t01	Wine grape	nucleus	74.93	76.82
KRH23181	Soybean	nucleus	74.06	75.93
AT3G20780.1	Thale cress	cytosol	72.32	74.48
CDY06380	Canola	cytosol	71.88	74.25
Solyc01g014490.2.1	Tomato	nucleus	72.17	74.11
GSMUA_Achr1P09300_001	Banana	golgi, mitochondrion	74.78	73.4
CDY19605	Canola	cytosol, plastid	72.46	72.99
Bra035745.1-P	Field mustard	cytosol, plastid	72.17	71.86
PGSC0003DMT400076882	Potato	nucleus	31.45	70.92
PGSC0003DMT400031535	Potato	cytosol	9.42	70.65
PGSC0003DMT400049158	Potato	cytosol	5.22	70.59
PGSC0003DMT400076881	Potato	cytosol	41.45	69.76
PGSC0003DMT400068945	Potato	cytosol, nucleus	7.54	64.2
Solyc11g028310.1.1	Tomato	cytosol, mitochondrion	6.38	57.14
Solyc11g028340.1.1	Tomato	mitochondrion	4.06	43.75
Solyc11g028300.1.1	Tomato	cytosol	9.42	43.62
Solyc11g028350.1.1	Tomato	mitochondrion	4.2	39.73
PGSC0003DMT400043995	Potato	mitochondrion	9.86	30.49
Solyc12g036030.1.1	Tomato	cytosol	3.77	27.08
Solyc11g028330.1.1	Tomato	cytosol	4.64	25.81

Protein Annotations

Gene3D:1.10.8.50	Gene3D:3.30.230.10	MapMan:35.1	GO:GO:0000166	GO:GO:0000902	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003918	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006265	GO:GO:0007049	GO:GO:0007275
GO:GO:0007389	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009719
GO:GO:0009741	GO:GO:0009987	GO:GO:0010026	GO:GO:0016043	GO:GO:0016787	GO:GO:0030154
GO:GO:0042023	GO:GO:0042802	GO:GO:0042803	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR014721
InterPro:IPR036890	HAMAP:MF_00322	PFAM:PD013790	PFAM:PF02518	PFAM:PF09239	PANTHER:PTHR10871
PANTHER:PTHR10871:SF4	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SUPFAM:SSF54211	SUPFAM:SSF55874	InterPro:TopoVI_B
InterPro:TopoVI_B_transducer	EnsemblPlantsGene:TraesCS5D01G178400	EnsemblPlants:TraesCS5D01G178400.1	TIGR:cd00075	TIGR:cd00823	SEG:seg

Description

No Description!

Coordinates

chr5D:+:277815415..277822516

Molecular Weight (calculated)

77226.6 Da

IEP (calculated)

9.217

GRAVY (calculated)

-0.468

Length

690 amino acids

Sequence
(BLAST)

001: MDDSSDGGAT AGGTKKKPSA AAAKGKATGK GKATSKAAPK AKESSLLKXX SPAEFFAENK NIAGFDNPGK SLYTTMRELV ENALDSAESI SELPDIEITI
101: EEITKSKFNT MIGLVDRERV DEALYDDFES SKAREKRLAK EARFQETQAK NAALGKKVKD TPAARGKGRG EASFFRVTCK DNGRGMPHED IPNMFGRVLS
201: GTKYGLRQTR GKFGLGAKMA LIWSKMSTGL PIDIKSSMKG QDYITFCRLD IDIHKNVPHI HLHEKRENND HWHGAEIQVI IEGNWTTHRS RILHYMRQMA
301: VITPYAQFLF RFLSDAAEKN LTIKFTRRTD VMPPVPLLTK HHPSAVDLLL IKRLITDTTK PNLLQFLQHE FVNISKAHAD RLIGEMGPDF SAKTTVNSLT
401: SQQLVRIHQL FRQAKFDDPS GNCLSPAGEY NLRLGIIKEL HPDLVATHAS SPQVFEGHPF IVEAGVSIGG KDVKQGLNIF RFANRIPLLF EQGADVITRT
501: ALKRINWSIY KINQQQDKIG VFVSIVSTKI PFKGTGKEYI GDDITEIADA VKSALKQCCI QLKSKIVKKL QAREQQDRKR NLNKYIPDVA RTIMETLGEL
601: ADESPPKRPR FDKEDEELLE KINSEEVTEM TFRDCLTQHV EQVDYEMALE YAMQSGVSEE PREAIYLNSL EGSYKFVDFQ SPAFVFRFIP

Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)

001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML

Arabidopsis Description

TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.