Factsheet for Solyc11g028300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
peroxisome 1
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g014490.2.1
Solyc08g081590.1.1
Solyc09g007210.2.1
Solyc11g028300.1.1
Solyc11g028330.1.1
Solyc11g028340.1.1
Solyc11g028350.1.1
Solyc12g036030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20780.1	Solyc08g081590.1.1	AT1G63990.1	11410368
AT3G20780.1	Solyc01g014490.2.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028300.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028330.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028340.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028350.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc12g036030.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc09g007210.2.1	AT5G02820.1	11410368
AT3G20780.1	Solyc09g007210.2.1	AT5G02820.1	16339310

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g028340.1.1	Tomato	mitochondrion	18.12	42.19
Solyc11g028350.1.1	Tomato	mitochondrion	14.09	28.77
Solyc11g028330.1.1	Tomato	cytosol	13.42	16.13
Solyc01g014490.2.1	Tomato	nucleus	51.01	11.31
VIT_06s0004g01530.t01	Wine grape	nucleus	45.64	10.1
AT3G20780.1	Thale cress	cytosol	44.97	10.0
CDY06380	Canola	cytosol	44.3	9.88
GSMUA_Achr1P09300_001	Banana	golgi, mitochondrion	45.64	9.67
CDY19605	Canola	cytosol, plastid	44.3	9.64
EER96475	Sorghum	nucleus	44.3	9.54
Bra035745.1-P	Field mustard	cytosol, plastid	44.3	9.52
TraesCS5A01G173900.1	Wheat	cytosol	43.62	9.42
TraesCS5D01G178400.1	Wheat	cytosol, plastid	43.62	9.42
Os09t0279600-01	Rice	nucleus	43.62	9.34
HORVU5Hr1G053310.1	Barley	cytosol	43.62	9.07
TraesCS5B01G171400.1	Wheat	nucleus	43.62	8.82
Solyc12g036030.1.1	Tomato	cytosol	4.03	6.25
Zm00001d019950_P001	Maize	nucleus	26.85	6.2
Solyc11g028310.1.1	Tomato	cytosol, mitochondrion	0.67	1.3

Protein Annotations

MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003735
GO:GO:0003824	GO:GO:0003918	GO:GO:0005198	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006259	GO:GO:0006265	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0042254
UniProt:K4D7G9	PANTHER:PTHR10871	PANTHER:PTHR10871:SF4	EnsemblPlantsGene:Solyc11g028300.1	EnsemblPlants:Solyc11g028300.1.1	InterPro:TopoVI_B
UniParc:UPI000276994E	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:21083915..21089102

Molecular Weight (calculated)

17490.2 Da

IEP (calculated)

8.431

GRAVY (calculated)

-0.313

Length

149 amino acids

Sequence
(BLAST)

001: MNGPSETVYS NYTAGLEELA VRVPNLLEPW TEHMKTKTRW HGAEIQIVIE KNWTTYKALI WSKMSTRFPI EITSSMNIEN YIYTSFCRLD IDIYNPNSMH
101: HMQHMTVITP YKNIRNIPSV PLETKYHPSV VDILFIKRLI TETSKQTLL

Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)

001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML

Arabidopsis Description

TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.