Factsheet for Solyc11g028350.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 4
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g014490.2.1
Solyc08g081590.1.1
Solyc09g007210.2.1
Solyc11g028300.1.1
Solyc11g028330.1.1
Solyc11g028340.1.1
Solyc11g028350.1.1
Solyc12g036030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20780.1	Solyc08g081590.1.1	AT1G63990.1	11410368
AT3G20780.1	Solyc01g014490.2.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028300.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028330.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028340.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc11g028350.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc12g036030.1.1	AT3G20780.1	16339310
AT3G20780.1	Solyc09g007210.2.1	AT5G02820.1	11410368
AT3G20780.1	Solyc09g007210.2.1	AT5G02820.1	16339310

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g028340.1.1	Tomato	mitochondrion	47.95	54.69
Solyc11g028330.1.1	Tomato	cytosol	45.21	26.61
PGSC0003DMT400043995	Potato	mitochondrion	53.42	17.49
Solyc11g028300.1.1	Tomato	cytosol	28.77	14.09
Solyc01g014490.2.1	Tomato	nucleus	50.68	5.51
VIT_06s0004g01530.t01	Wine grape	nucleus	45.21	4.9
Zm00001d019950_P001	Maize	nucleus	39.73	4.5
GSMUA_Achr1P09300_001	Banana	golgi, mitochondrion	42.47	4.41
AT3G20780.1	Thale cress	cytosol	39.73	4.33
TraesCS5D01G178400.1	Wheat	cytosol, plastid	39.73	4.2
EER96475	Sorghum	nucleus	39.73	4.19
TraesCS5A01G173900.1	Wheat	cytosol	38.36	4.06
CDY06380	Canola	cytosol	36.99	4.04
CDY19605	Canola	cytosol, plastid	36.99	3.94
HORVU5Hr1G053310.1	Barley	cytosol	38.36	3.91
Bra035745.1-P	Field mustard	cytosol, plastid	36.99	3.9
Os09t0279600-01	Rice	nucleus	36.99	3.88
TraesCS5B01G171400.1	Wheat	nucleus	38.36	3.8
Solyc11g028310.1.1	Tomato	cytosol, mitochondrion	1.37	1.3
Solyc12g036030.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc11g028350.1.1

EnsemblPlantsGene:Solyc11g028350.1

UniParc:UPI0002769953

UniProt:K4D7H4

MapMan:35.2

Description

No Description!

Coordinates

chr11:+:21284530..21285710

Molecular Weight (calculated)

8683.8 Da

IEP (calculated)

10.564

GRAVY (calculated)

-0.036

Length

73 amino acids

Sequence
(BLAST)

1: MTRSFFQGSV LLQFCLEQCM KQTRGNLVFV HRWKNVLIRF TRRTYIMPSV PLEAKYHPSA VDIFLMKQLT TET

Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)

001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML

Arabidopsis Description

TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.