CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70343
CDY06380
CDY10421
CDY19605
CDY25553
CDY34392

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20780.1	CDY25553	AT1G63990.1	11410368
AT3G20780.1	CDY34392	AT1G63990.1	11410368
AT3G20780.1	CDY06380	AT3G20780.1	16339310
AT3G20780.1	CDY19605	AT3G20780.1	16339310
AT3G20780.1	CDX70343	AT5G02820.1	11410368
AT3G20780.1	CDY10421	AT5G02820.1	11410368
AT3G20780.1	CDX70343	AT5G02820.1	16339310
AT3G20780.1	CDY10421	AT5G02820.1	16339310

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19605	Canola	cytosol, plastid	99.55	97.08
Bra035745.1-P	Field mustard	cytosol, plastid	99.55	95.96
AT3G20780.1	Thale cress	cytosol	94.16	93.88
VIT_06s0004g01530.t01	Wine grape	nucleus	80.54	79.94
KRH23181	Soybean	nucleus	80.24	79.64
Solyc01g014490.2.1	Tomato	nucleus	77.69	77.23
PGSC0003DMT400076882	Potato	nucleus	35.33	77.12
PGSC0003DMT400031535	Potato	cytosol	10.03	72.83
PGSC0003DMT400049158	Potato	cytosol	5.54	72.55
TraesCS5D01G178400.1	Wheat	cytosol, plastid	74.25	71.88
TraesCS5A01G173900.1	Wheat	cytosol	74.25	71.88
PGSC0003DMT400076881	Potato	cytosol	43.56	70.98
EER96475	Sorghum	nucleus	73.35	70.81
Os09t0279600-01	Rice	nucleus	73.65	70.69
GSMUA_Achr1P09300_001	Banana	golgi, mitochondrion	73.5	69.84
HORVU5Hr1G053310.1	Barley	cytosol	74.1	69.04
TraesCS5B01G171400.1	Wheat	nucleus	74.4	67.44
Zm00001d019950_P001	Maize	nucleus	64.82	67.13
PGSC0003DMT400068945	Potato	cytosol, nucleus	7.19	59.26
Solyc11g028300.1.1	Tomato	cytosol	9.88	44.3
Solyc11g028340.1.1	Tomato	mitochondrion	4.04	42.19
Solyc11g028350.1.1	Tomato	mitochondrion	4.04	36.99
PGSC0003DMT400043995	Potato	mitochondrion	10.18	30.49
Solyc12g036030.1.1	Tomato	cytosol	3.89	27.08
Solyc11g028330.1.1	Tomato	cytosol	4.34	23.39

Protein Annotations

Gene3D:1.10.8.50	Gene3D:3.30.230.10	MapMan:35.1	GO:A0A078EWD3	EnsemblPlants:CDY06380	ProteinID:CDY06380
ProteinID:CDY06380.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003918	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006265	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00122340001	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:IPR014721	InterPro:IPR036890	HAMAP:MF_00322
PFAM:PD013790	PFAM:PF02518	PFAM:PF09239	PANTHER:PTHR10871	PANTHER:PTHR10871:SF4	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SUPFAM:SSF54211	SUPFAM:SSF55874	InterPro:TopoVI_B	InterPro:TopoVI_B_transducer	UniParc:UPI0004EDBCBA
SEG:seg	:	:	:	:	:

Description

BnaC05g31500D

Coordinates

chrLK031969:-:106039..110643

Molecular Weight (calculated)

75544.9 Da

IEP (calculated)

9.803

GRAVY (calculated)

-0.513

Length

668 amino acids

Sequence
(BLAST)

001: MAGGDSPAET KKGSSKTSKN SKESTLKQKS PAEFFAENKN IAGFDNPGKS LYTTVRELVE NALDSSESIS ELPEVEVTIE EIGKSKFNSM IGLIDRERVD
101: TKLYDDYETD KAREKRLVKE ARASEIQAKN LASGKKNKEP GVSRVLKARG EASYYKVTCR DNGKGMPHDD IPNMFGRVLS GTKYGLKQTR GKFGLGAKMA
201: LIWSKMSTGL PIEISSSMKS QNYVTFCRLD IDIHRNIPHI HLHEKKANKE KWHGAEIQVV IEGNWTTYRS KILHYMRQMA VITPYAQFLF RFISETPEKN
301: VTVKFTRRTD VMPPIPIETK HHPSSVDLLL IKRLVTDTSK KTLLQFLQNE FVNINKNLAA RLIGEMGPDF SPGMAVKSVT SQQMVRIHQL FRQAKFDDPS
401: GDCLSPAGEY NLRLGIIKEL HPDMVATHSG SAQVFEGHPF IVEAGVSVGG RDGINIFRFA NRIPLLFEQG GDVVTRTALK RINWNSYKIN QTQDKIGVFV
501: SIVSTKIPFK GTGKEYIGDD ISEIATAVKS AIQQCCIQLK SKIVKRLQAR EQQERKRSLS RYIPDATGAV YEVLKQMTEE HTKKRKRYKE EETAMLEKVS
601: KLIITKETLK EKLAEHVEQV DYEMALEYAT QSGVSEEPRE NIYLQQLNPN HSNFIDLHSP TFVFRLIL

Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)

001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML

Arabidopsis Description

TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.