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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER95053
EER96475
KXG24464

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G20780.1 KXG24464 AT1G63990.1 11410368
AT3G20780.1 EER96475 AT3G20780.1 16339310
AT3G20780.1 EER95053 AT5G02820.1 11410368
AT3G20780.1 EER95053 AT5G02820.1 16339310
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d019950_P001 Maize nucleus 84.97 91.16
Os09t0279600-01 Rice nucleus 86.85 86.35
TraesCS5A01G173900.1 Wheat cytosol 84.83 85.07
TraesCS5D01G178400.1 Wheat cytosol, plastid 84.39 84.64
HORVU5Hr1G053310.1 Barley cytosol 84.54 81.59
TraesCS5B01G171400.1 Wheat nucleus 84.39 79.24
VIT_06s0004g01530.t01 Wine grape nucleus 74.57 76.67
KRH23181 Soybean nucleus 74.42 76.52
GSMUA_Achr1P09300_001 Banana golgi, mitochondrion 77.02 75.82
AT3G20780.1 Thale cress cytosol 71.53 73.88
Solyc01g014490.2.1 Tomato nucleus 71.53 73.66
CDY06380 Canola cytosol 70.81 73.35
CDY19605 Canola cytosol, plastid 71.39 72.12
Bra035745.1-P Field mustard cytosol, plastid 71.1 71.0
PGSC0003DMT400076882 Potato nucleus 31.36 70.92
PGSC0003DMT400076881 Potato cytosol 40.75 68.78
PGSC0003DMT400049158 Potato cytosol 5.06 68.63
PGSC0003DMT400031535 Potato cytosol 9.1 68.48
PGSC0003DMT400068945 Potato cytosol, nucleus 6.36 54.32
Solyc11g028310.1.1 Tomato cytosol, mitochondrion 5.92 53.25
Solyc11g028300.1.1 Tomato cytosol 9.54 44.3
Solyc11g028350.1.1 Tomato mitochondrion 4.19 39.73
Solyc11g028340.1.1 Tomato mitochondrion 3.61 39.06
PGSC0003DMT400043995 Potato mitochondrion 9.39 29.15
Solyc12g036030.1.1 Tomato cytosol 3.47 25.0
Solyc11g028330.1.1 Tomato cytosol 4.19 23.39
Protein Annotations
Gene3D:1.10.8.50Gene3D:3.30.230.10MapMan:35.1EntrezGene:8062034UniProt:C5X862EnsemblPlants:EER96475
ProteinID:EER96475ProteinID:EER96475.1GO:GO:0000166GO:GO:0000902GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003735GO:GO:0003824GO:GO:0003916GO:GO:0003918GO:GO:0005198
GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006139GO:GO:0006259
GO:GO:0006265GO:GO:0006412GO:GO:0007049GO:GO:0007275GO:GO:0007389GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009330GO:GO:0009653GO:GO:0009719GO:GO:0009741
GO:GO:0009987GO:GO:0010026GO:GO:0015935GO:GO:0016043GO:GO:0016787GO:GO:0016853
GO:GO:0019538GO:GO:0030154GO:GO:0042023GO:GO:0042254GO:GO:0042802GO:GO:0042803
GO:GO:0061505InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:IPR014721InterPro:IPR036890HAMAP:MF_00322
PFAM:PD013790PFAM:PF02518PFAM:PF09239PANTHER:PTHR10871PANTHER:PTHR10871:SF4InterPro:Ribosomal_S13-like_H2TH
InterPro:Ribosomal_S5_D2-typ_foldInterPro:Ribosomal_S5_D2-typ_fold_subgrEnsemblPlantsGene:SORBI_3002G152900SUPFAM:SSF46946SUPFAM:SSF54211SUPFAM:SSF55874
unigene:Sbi.13744InterPro:TopoVI_BInterPro:TopoVI_B_transducerUniParc:UPI0001A8378BRefSeq:XP_002459954.1SEG:seg
Description
hypothetical protein
Coordinates
chr2:+:45428671..45435233
Molecular Weight (calculated)
77772.6 Da
IEP (calculated)
9.522
GRAVY (calculated)
-0.478
Length
692 amino acids
Sequence
(BLAST)
001: MDTSDDEATA AAAETKKKTP KAAAAKGKAT GKGKAAAGPK ASAKESSLLK QKSPAEFFAE NKNIAGFDNP GKSLYTTLRE LVENALDSAE SISELPDIEI
101: TIEEITRTKY NTMIGLVERQ RVDEALYDDF ESEKDREKRL AKEARFQEIQ AKNAALGKKV KEAPSVRGKG RGEAVLFKVT CKDNGRGMPH DDIPNMLGRV
201: LSGTKYGLRQ TRGKFGLGAK MALIWSKMST GLPIEIKSSM KGQNYTSFCR LDIDIHKNIP HVHLHEKREN KTNWHGAEIE VIIEGNWTTH RSKILHYMRQ
301: MAVITPYAQF LFKFLSDAAD KNLTIKFARR TDVMPPVPLQ TKHHPSAVDL LLIKGLVAET TKQNLLQFLQ HEFVNISKSH AERLIGEMGP DFSPKMTVKS
401: LTSQQLVRIH QLFRQAKFDD PSGNCLSPAG EYNLRLGIIK ELHPDMVATH ASSPQVFEGH PFIVEAGISI GGKDVKQGIN IFRFANRIPL LFEQGADVIT
501: RTATKRMVWS SYKINQHQDK IGVFVSIVST KIPFKGTGKE YIGDDITEIS SAVKSALKQC CLQLKSKIVK KLQARERQDR KRNLNRYIPD VARAIMETLV
601: EIADQSPPKR PRYDKEDEEL LEKVNSQEVT EMTFRDCLTQ HVEQVDYEMA LDYAMQSGVS EEPREAIYLN SLEGSYKFVD LQSPVFVFRF VP
Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)
001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML
Arabidopsis Description
TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.