Factsheet for PGSC0003DMT400043995

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400031535
PGSC0003DMT400031764
PGSC0003DMT400043995
PGSC0003DMT400049158
PGSC0003DMT400068945
PGSC0003DMT400071721
PGSC0003DMT400076881
PGSC0003DMT400076882

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20780.1	PGSC0003DMT400031764	AT1G63990.1	11410368
AT3G20780.1	PGSC0003DMT400031535	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400043995	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400049158	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400068945	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400076881	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400076882	AT3G20780.1	16339310
AT3G20780.1	PGSC0003DMT400071721	AT5G02820.1	11410368
AT3G20780.1	PGSC0003DMT400071721	AT5G02820.1	16339310

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g028340.1.1	Tomato	mitochondrion	17.49	60.94
Solyc11g028350.1.1	Tomato	mitochondrion	17.49	53.42
PGSC0003DMT400076881	Potato	cytosol	24.22	13.17
VIT_06s0004g01530.t01	Wine grape	nucleus	31.39	10.4
AT3G20780.1	Thale cress	cytosol	30.94	10.3
GSMUA_Achr1P09300_001	Banana	golgi, mitochondrion	32.29	10.24
Zm00001d019950_P001	Maize	nucleus	29.6	10.23
CDY06380	Canola	cytosol	30.49	10.18
CDY19605	Canola	cytosol, plastid	30.49	9.93
TraesCS5D01G178400.1	Wheat	cytosol, plastid	30.49	9.86
KRH23181	Soybean	nucleus	29.6	9.81
TraesCS5A01G173900.1	Wheat	cytosol	30.04	9.71
Bra035745.1-P	Field mustard	cytosol, plastid	30.04	9.67
Os09t0279600-01	Rice	nucleus	29.6	9.48
EER96475	Sorghum	nucleus	29.15	9.39
HORVU5Hr1G053310.1	Barley	cytosol	30.04	9.34
TraesCS5B01G171400.1	Wheat	nucleus	30.04	9.09
PGSC0003DMT400031535	Potato	cytosol	3.14	7.61
PGSC0003DMT400076882	Potato	nucleus	10.31	7.52
PGSC0003DMT400068945	Potato	cytosol, nucleus	2.24	6.17
PGSC0003DMT400049158	Potato	cytosol	0.9	3.92

Protein Annotations

MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003918	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006265
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	UniProt:M1BFG6
EnsemblPlantsGene:PGSC0003DMG401017076	PGSC:PGSC0003DMG401017076	EnsemblPlants:PGSC0003DMT400043995	PANTHER:PTHR10871	PANTHER:PTHR10871:SF4	InterPro:TopoVI_B
UniParc:UPI000294D8B4	SEG:seg	:	:	:	:

Description

Type II DNA topoisomerase VI subunit B [Source:PGSC_GENE;Acc:PGSC0003DMG401017076]

Coordinates

chr00:-:17835860..17839669

Molecular Weight (calculated)

25981.6 Da

IEP (calculated)

10.405

GRAVY (calculated)

-0.415

Length

223 amino acids

Sequence
(BLAST)

001: MAQIDMNRGI IRSRAQQVLK FPKAQVKRPR MFLTFIHEKQ ENEDRWHGAE IQIVVERNWT TYRFLFDCRK NVLIRFTRRT YIMPSVPLET KYHPSDVDIL
101: LIKRLITETS KHSFAVFLQH EFVAVSCRTF NREEIGRSKF NPMIGLGDHE RRDEALYIGF ETAKAREKRL AKEARVLEIQ AKNVALGKNV KDPAATKTAK
201: GREALYYRVT CNVSSVSLCS SIC

Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)

001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML

Arabidopsis Description

TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.