Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400031535 | Potato | cytosol | 35.8 | 31.52 |
| PGSC0003DMT400076881 | Potato | cytosol | 86.42 | 17.07 |
| VIT_06s0004g01530.t01 | Wine grape | nucleus | 70.37 | 8.47 |
| KRH23181 | Soybean | nucleus | 69.14 | 8.32 |
| TraesCS5D01G178400.1 | Wheat | cytosol, plastid | 64.2 | 7.54 |
| TraesCS5A01G173900.1 | Wheat | cytosol | 64.2 | 7.54 |
| AT3G20780.1 | Thale cress | cytosol | 61.73 | 7.46 |
| CDY19605 | Canola | cytosol, plastid | 61.73 | 7.3 |
| Zm00001d019950_P001 | Maize | nucleus | 58.02 | 7.29 |
| HORVU5Hr1G053310.1 | Barley | cytosol | 64.2 | 7.25 |
| Bra035745.1-P | Field mustard | cytosol, plastid | 61.73 | 7.22 |
| CDY06380 | Canola | cytosol | 59.26 | 7.19 |
| GSMUA_Achr1P09300_001 | Banana | golgi, mitochondrion | 61.73 | 7.11 |
| TraesCS5B01G171400.1 | Wheat | nucleus | 64.2 | 7.06 |
| Os09t0279600-01 | Rice | nucleus | 60.49 | 7.04 |
| EER96475 | Sorghum | nucleus | 54.32 | 6.36 |
| PGSC0003DMT400043995 | Potato | mitochondrion | 6.17 | 2.24 |
| PGSC0003DMT400049158 | Potato | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400076882 | Potato | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400068945 | EnsemblPlantsGene:PGSC0003DMG400026817 | PGSC:PGSC0003DMG400026817 | UniParc:UPI000296401A | UniProt:M1CJP8 | MapMan:35.1 |
Description
Type II DNA topoisomerase VI subunit B [Source:PGSC_GENE;Acc:PGSC0003DMG400026817]
Coordinates
chr4:-:40808111..40812495
Molecular Weight (calculated)
9122.8 Da
IEP (calculated)
10.105
GRAVY (calculated)
-0.710
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: IEEIGRSKFN SLIGPADHER RDEALYDDFV TAKARDERLA KEARVLVQAK NVALGKKVKD PAATKATRSR EASYYRVTCK V
001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML
Arabidopsis Description
TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.