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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • plastid 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
 nucleus: 19621931
nucleus: 23777608
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os03t0284800-01
Os08t0156900-01
Os09t0279600-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G20780.1 Os08t0156900-01 AT1G63990.1 11410368
AT3G20780.1 Os09t0279600-01 AT3G20780.1 16339310
AT3G20780.1 Os03t0284800-01 AT5G02820.1 11410368
AT3G20780.1 Os03t0284800-01 AT5G02820.1 16339310
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G173900.1 Wheat cytosol 88.07 88.84
TraesCS5D01G178400.1 Wheat cytosol, plastid 87.64 88.41
EER96475 Sorghum nucleus 86.35 86.85
HORVU5Hr1G053310.1 Barley cytosol 87.5 84.94
TraesCS5B01G171400.1 Wheat nucleus 87.93 83.04
Zm00001d019950_P001 Maize nucleus 76.29 82.33
VIT_06s0004g01530.t01 Wine grape nucleus 75.14 77.71
KRH23181 Soybean nucleus 74.28 76.82
GSMUA_Achr1P09300_001 Banana golgi, mitochondrion 76.15 75.39
Solyc01g014490.2.1 Tomato nucleus 71.41 73.96
AT3G20780.1 Thale cress cytosol 70.98 73.73
CDY06380 Canola cytosol 70.69 73.65
CDY19605 Canola cytosol, plastid 71.12 72.26
Bra035745.1-P Field mustard cytosol, plastid 70.83 71.14
PGSC0003DMT400031535 Potato cytosol 9.34 70.65
PGSC0003DMT400076882 Potato nucleus 30.89 70.26
PGSC0003DMT400076881 Potato cytosol 41.24 70.0
PGSC0003DMT400049158 Potato cytosol 5.03 68.63
PGSC0003DMT400068945 Potato cytosol, nucleus 7.04 60.49
Solyc11g028310.1.1 Tomato cytosol, mitochondrion 6.18 55.84
Solyc11g028300.1.1 Tomato cytosol 9.34 43.62
Solyc11g028340.1.1 Tomato mitochondrion 3.74 40.62
Solyc11g028350.1.1 Tomato mitochondrion 3.88 36.99
PGSC0003DMT400043995 Potato mitochondrion 9.48 29.6
Solyc12g036030.1.1 Tomato cytosol 3.59 26.04
Solyc11g028330.1.1 Tomato cytosol 4.31 24.19
Protein Annotations
Gene3D:1.10.8.50Gene3D:3.30.230.10MapMan:35.1EntrezGene:4346606EMBL:AK101452EMBL:AY371050
ProteinID:BAD26507.1ProteinID:BAF24675.1ProteinID:BAT07216.1ProteinID:EEE69338.1GO:GO:0000166GO:GO:0000902
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003735GO:GO:0003824GO:GO:0003916
GO:GO:0003918GO:GO:0005198GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0005840
GO:GO:0006139GO:GO:0006259GO:GO:0006265GO:GO:0006412GO:GO:0007049GO:GO:0007275
GO:GO:0007389GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009653GO:GO:0009719
GO:GO:0009741GO:GO:0009987GO:GO:0010026GO:GO:0015935GO:GO:0016043GO:GO:0016787
GO:GO:0016853GO:GO:0019538GO:GO:0030154GO:GO:0042023GO:GO:0042254GO:GO:0042802
GO:GO:0042803GO:GO:0061505InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:IPR014721InterPro:IPR036890
HAMAP:MF_00322EnsemblPlantsGene:Os09g0279600EnsemblPlants:Os09t0279600-01PFAM:PD013790PFAM:PF02518PFAM:PF09239
PANTHER:PTHR10871PANTHER:PTHR10871:SF4UniProt:Q6H442InterPro:Ribosomal_S5_D2-typ_foldInterPro:Ribosomal_S5_D2-typ_fold_subgrSUPFAM:SSF54211
SUPFAM:SSF55874InterPro:TopoVI_BInterPro:TopoVI_B_transducerUniParc:UPI00003B471ERefSeq:XP_015612693.1SEG:seg
Description
TOPOISOMERASE 6 SUBUNIT BSimilar to Topoisomerase 6 subunit B. (Os09t0279600-01)
Coordinates
chr9:+:5874972..5883020
Molecular Weight (calculated)
78019.6 Da
IEP (calculated)
9.401
GRAVY (calculated)
-0.452
Length
696 amino acids
Sequence
(BLAST)
001: MDDDAGDGAA SGGTKRKVTA ASSSAAAKGK AAGKGKAASK ASALATAKES SLLKQKSPAE FFAENKNIAG FDNPGKSLYT TMRELVENAL DSAESISELP
101: DIEIIIEEIT KSKFNTMIGL VDRQRIDEEL YDDFESAKAR EKRLAKEARF QETQAKNAAL GKKVKEAPAA RGKGRGEAAF FRVTCKDNGR GMPHDDIPNM
201: LGRVLSGTKY GLRQTRGKFG LGAKMALIWS KMSTGLPIEI KSSMKGQNFI SFCLLDIDIH KNVPHVHLHE KRENKDRWHG AELQVIIEGN WTTHRSKILH
301: YMRQMAVITP YAQFLFRFLS DSPDKNLTIQ FARRTDVMPP IPLQTKHHPS AVDLLLIKRL ISETTKQNLL QFLQHEFVNI SKSHAERLIG EMGPDFSAKT
401: TVKSLTSQQL VRIHQLFRQA KFDDPSGNCL SPAGEYNLRL GIIKELHPDL VATHASSPQV FEGHPFIVEA GISIGGKDVK HGLNIFRYAN RIPLLFEQGA
501: DVITRTALKR INWSSYKINQ QQDKIGVFVS IVSTKIPFKG TGKEYIGDDI TEIASAVQSA LKQCCLQLKS KIVKKLQARE RQDRKRNLNR YIPDVARAIM
601: ETLGEIADES PPKRPRYDKE DEELLEKVNS EEVTEMTFRD CLTQHVEQVD YEMALEYAMQ SGVSEEPREA LYLNSLEGSY KFIDFQSPVF VFRFIP
Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)
001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML
Arabidopsis Description
TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.