Factsheet for Zm00001d019950_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d019950_P001
Zm00001d028705_P001
Zm00001d049550_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20780.1	Zm00001d049550_P001	AT1G63990.1	11410368
AT3G20780.1	Zm00001d019950_P001	AT3G20780.1	16339310
AT3G20780.1	Zm00001d028705_P001	AT5G02820.1	11410368
AT3G20780.1	Zm00001d028705_P001	AT5G02820.1	16339310

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96475	Sorghum	nucleus	91.16	84.97
Os09t0279600-01	Rice	nucleus	82.33	76.29
TraesCS5A01G173900.1	Wheat	cytosol	81.09	75.8
TraesCS5D01G178400.1	Wheat	cytosol, plastid	80.93	75.65
HORVU5Hr1G053310.1	Barley	cytosol	80.93	72.8
PGSC0003DMT400031535	Potato	cytosol	10.08	70.65
TraesCS5B01G171400.1	Wheat	nucleus	80.62	70.56
PGSC0003DMT400076882	Potato	nucleus	32.87	69.28
PGSC0003DMT400049158	Potato	cytosol	5.43	68.63
VIT_06s0004g01530.t01	Wine grape	nucleus	71.01	68.05
KRH23181	Soybean	nucleus	70.39	67.46
GSMUA_Achr1P09300_001	Banana	golgi, mitochondrion	72.71	66.71
AT3G20780.1	Thale cress	cytosol	67.91	65.37
CDY06380	Canola	cytosol	67.13	64.82
Solyc01g014490.2.1	Tomato	nucleus	67.44	64.73
CDY19605	Canola	cytosol, plastid	67.75	63.8
Bra035745.1-P	Field mustard	cytosol, plastid	67.44	62.77
PGSC0003DMT400068945	Potato	cytosol, nucleus	7.29	58.02
PGSC0003DMT400076881	Potato	cytosol	35.19	55.37
Solyc11g028310.1.1	Tomato	cytosol, mitochondrion	6.36	53.25
Solyc11g028340.1.1	Tomato	mitochondrion	4.19	42.19
Solyc11g028350.1.1	Tomato	mitochondrion	4.5	39.73
PGSC0003DMT400043995	Potato	mitochondrion	10.23	29.6
Solyc12g036030.1.1	Tomato	cytosol	4.03	27.08
Solyc11g028300.1.1	Tomato	cytosol	6.2	26.85
Solyc11g028330.1.1	Tomato	cytosol	4.96	25.81

Protein Annotations

Gene3D:1.10.8.50	Gene3D:3.30.230.10	MapMan:35.1	UniProt:A0A1D6I196	GO:GO:0000166	GO:GO:0000902
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003918	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006265	GO:GO:0007049
GO:GO:0007275	GO:GO:0007389	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009719	GO:GO:0009741	GO:GO:0009987	GO:GO:0010026	GO:GO:0016043	GO:GO:0016787
GO:GO:0016853	GO:GO:0030154	GO:GO:0042023	GO:GO:0042802	GO:GO:0042803	InterPro:HATPase_C
InterPro:HATPase_C_sf	InterPro:IPR014721	InterPro:IPR036890	ProteinID:ONM53993.1	PFAM:PD013790	PFAM:PF02518
PFAM:PF09239	PANTHER:PTHR10871	PANTHER:PTHR10871:SF4	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SUPFAM:SSF54211
SUPFAM:SSF55874	InterPro:TopoVI_B	InterPro:TopoVI_B_transducer	UniParc:UPI000843C48A	EnsemblPlantsGene:Zm00001d019950	EnsemblPlants:Zm00001d019950_P001
EnsemblPlants:Zm00001d019950_T001	SEG:seg	:	:	:	:

Description

DNA topoisomerase 6 subunit B

Coordinates

chr7:+:79542481..79552728

Molecular Weight (calculated)

71850.6 Da

IEP (calculated)

9.550

GRAVY (calculated)

-0.344

Length

645 amino acids

Sequence
(BLAST)

001: MNTSDDEAIA AAAETKKKTP KAAAAKGKAT GKGKAAAGPK TSAKESSLLK QKSPAEFFAE NKNIAGFDNP GKSLYTTLRE LVENALDSAE SISELPEIEI
101: TIEEITKTKF NTMIGLVDRQ RVDEALYDDF ESEKAREKRL AKEARFQESQ AKNAALGKKV KDAPSVRGKG RGEAAFFKVT CKDNGRGMPH DDIPNMLGRV
201: WSFLTWRGDS TTMSNIIGVI YIGAVLSGTK YGLRQTRGKF GLGAKMSKIL HYMRQMAVIT PYAQFLFKFL SDAADKNLTI KFTRRTDVMP PVPLQTKHHP
301: SAVDLLLIKR LVAETTKQNL LQFLQHEFVN ISKPHAERLI GEMGPDFSQK MAVKSLTSQQ LVRIHQLFRQ AKFDDPSGNC LSPAGEYNLR LGIIKELHPD
401: MVATHASSPQ VFEGHPFIVE AGISIGGKDV KQGLNIFRFA NRIPLLFEQG ADVITRTAAK RISWSSYKIN QQQDKIGVFV SIVSTKIPFK GTGKEYIGDD
501: ITEISSAVKS ALKQCCLQLK SKIVKKLQAL SLLAFKLTTY IPDVARAVME TLVEIADQSP PKRPRYDKED EELLEKVNSQ EVTEMTFRDC LTQHVEQVDY
601: EMALDYAMQS GVSEEPREAI YLNSLEGSYK FVDLQSPVFV FRFVH

Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)

001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML

Arabidopsis Description

TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.