Factsheet for GSMUA_Achr1P09300_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

nucleus 2
mitochondrion 3
golgi 3
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P09300_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20780.1	GSMUA_AchrUn_...	AT1G63990.1	11410368
AT3G20780.1	GSMUA_Achr1P09300_001	AT3G20780.1	16339310

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96475	Sorghum	nucleus	75.82	77.02
VIT_06s0004g01530.t01	Wine grape	nucleus	73.68	76.97
KRH23181	Soybean	nucleus	73.26	76.52
Os09t0279600-01	Rice	nucleus	75.39	76.15
AT3G20780.1	Thale cress	cytosol	71.55	75.07
TraesCS5A01G173900.1	Wheat	cytosol	73.54	74.93
TraesCS5D01G178400.1	Wheat	cytosol, plastid	73.4	74.78
Solyc01g014490.2.1	Tomato	nucleus	70.41	73.66
CDY06380	Canola	cytosol	69.84	73.5
Zm00001d019950_P001	Maize	nucleus	66.71	72.71
CDY19605	Canola	cytosol, plastid	70.41	72.26
HORVU5Hr1G053310.1	Barley	cytosol	73.4	71.97
PGSC0003DMT400076882	Potato	nucleus	31.29	71.9
Bra035745.1-P	Field mustard	cytosol, plastid	70.41	71.43
PGSC0003DMT400049158	Potato	cytosol	5.12	70.59
TraesCS5B01G171400.1	Wheat	nucleus	73.26	69.88
PGSC0003DMT400076881	Potato	cytosol	40.11	68.78
PGSC0003DMT400031535	Potato	cytosol	8.96	68.48
PGSC0003DMT400068945	Potato	cytosol, nucleus	7.11	61.73
Solyc11g028310.1.1	Tomato	cytosol, mitochondrion	5.97	54.55
Solyc11g028340.1.1	Tomato	mitochondrion	4.27	46.88
Solyc11g028300.1.1	Tomato	cytosol	9.67	45.64
Solyc11g028350.1.1	Tomato	mitochondrion	4.41	42.47
PGSC0003DMT400043995	Potato	mitochondrion	10.24	32.29
Solyc11g028330.1.1	Tomato	cytosol	4.84	27.42
Solyc12g036030.1.1	Tomato	cytosol	3.41	25.0

Protein Annotations

Gene3D:1.10.8.50	Gene3D:3.30.230.10	MapMan:35.1	GO:GO:0000166	GO:GO:0000902	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003916	GO:GO:0003918	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006265	GO:GO:0007049	GO:GO:0007275	GO:GO:0007389
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009330	GO:GO:0009653	GO:GO:0009719
GO:GO:0009741	GO:GO:0009987	GO:GO:0010026	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016787	GO:GO:0016853	GO:GO:0030154	GO:GO:0042023	GO:GO:0042802	GO:GO:0042803
GO:GO:0061505	EnsemblPlantsGene:GSMUA_Achr1G09300_001	EnsemblPlants:GSMUA_Achr1P09300_001	EnsemblPlants:GSMUA_Achr1T09300_001	InterPro:HATPase_C	InterPro:HATPase_C_sf
InterPro:IPR014721	InterPro:IPR036890	UniProt:M0RYD9	HAMAP:MF_00322	PFAM:PD013790	PFAM:PF02518
PFAM:PF09239	PANTHER:PTHR10871	PANTHER:PTHR10871:SF4	InterPro:Ribosomal_S13-like_H2TH	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
SUPFAM:SSF46946	SUPFAM:SSF54211	SUPFAM:SSF55874	TMHMM:TMhelix	InterPro:TopoVI_B	InterPro:TopoVI_B_transducer
UniParc:UPI000295F7B9	SEG:seg	:	:	:	:

Description

DNA topoisomerase 6 subunit B [Source:GMGC_GENE;Acc:GSMUA_Achr1G09300_001]

Coordinates

chr1:+:7149762..7160245

Molecular Weight (calculated)

80480.1 Da

IEP (calculated)

8.949

GRAVY (calculated)

-0.321

Length

703 amino acids

Sequence
(BLAST)

001: MPTRGFYTTV RWSVVFRFGM VIDPQEVRWY LLFLETATRA FVFWFFLALI WVFLCFFLFF AESPAEFFAE NKNIAGFDNP GKSLYTTVRE LVENALDSAE
101: SISQLPDIEL IIEEITKNKF NTMIGLVDRQ RVDEELYDDF ETTKAREKRL AKEARMQEIQ AKNVALGKKL KEPPAIKSGK GRGEASFFKV TCKDNGRGMP
201: HDEIPNMFGR VLSGTKYGLK QTRGKFGLGA KMALIWSKMS TGLPIEILSA TRGQNYASFC RLDIDIHQNI PHVHLHEKRE NKDKWHGAEI QIIIEGNWTT
301: YRSKILHYMR QMAVITPYSQ FFFKFISGIS EKNLTIRFAR RTDVMPPAPL ETKHHPSAVD ILLIKRLIAE TSKQTLQQFL QHEFVNISKS YAERLVGEMG
401: PDFGPKMAVK NLTSHQIVRI HQLFRQAKFD DPSGDCLSPA GEYNLRLGII KELQPDMVAT CSSSPQVFEG HPFIVEAGIS LGGKDVKQGL NIFRFANRIP
501: LLFEQGADVV TRTAMKKINW SSYKINQMQD KIGVFVSIVS TKVPFKGTGK EYIGDDITEI SSAVKSAIKQ CCLQLRSKIV KKLQARERQE RKRNLTRYIP
601: DASRAIMDVL EEMAQNYEPK RQRYDKEDDE LLNKIASKEI TETTFGESLS QYVEQVDYEM ALEYATQSGA SEEPREPIYL SSLEGSYSYV DLHSPVFVFR
701: LIT

Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)

001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML

Arabidopsis Description

TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.