Factsheet for HORVU5Hr1G053310.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G057310.1
HORVU5Hr1G053310.1
HORVU7Hr1G071060.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20780.1	HORVU7Hr1G071060.1	AT1G63990.1	11410368
AT3G20780.1	HORVU5Hr1G053310.1	AT3G20780.1	16339310
AT3G20780.1	HORVU4Hr1G057310.1	AT5G02820.1	11410368
AT3G20780.1	HORVU4Hr1G057310.1	AT5G02820.1	16339310

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G173900.1	Wheat	cytosol	95.26	98.99
TraesCS5D01G178400.1	Wheat	cytosol, plastid	94.7	98.41
TraesCS5B01G171400.1	Wheat	nucleus	94.7	92.13
Os09t0279600-01	Rice	nucleus	84.94	87.5
EER96475	Sorghum	nucleus	81.59	84.54
Zm00001d019950_P001	Maize	nucleus	72.8	80.93
VIT_06s0004g01530.t01	Wine grape	nucleus	72.11	76.82
KRH23181	Soybean	nucleus	71.97	76.67
AT3G20780.1	Thale cress	cytosol	69.6	74.48
Solyc01g014490.2.1	Tomato	nucleus	69.46	74.11
CDY06380	Canola	cytosol	69.04	74.1
GSMUA_Achr1P09300_001	Banana	golgi, mitochondrion	71.97	73.4
CDY19605	Canola	cytosol, plastid	69.6	72.85
PGSC0003DMT400031535	Potato	cytosol	9.21	71.74
Bra035745.1-P	Field mustard	cytosol, plastid	69.32	71.72
PGSC0003DMT400076882	Potato	nucleus	30.13	70.59
PGSC0003DMT400049158	Potato	cytosol	5.02	70.59
PGSC0003DMT400076881	Potato	cytosol	40.17	70.24
PGSC0003DMT400068945	Potato	cytosol, nucleus	7.25	64.2
Solyc11g028310.1.1	Tomato	cytosol, mitochondrion	6.14	57.14
Solyc11g028300.1.1	Tomato	cytosol	9.07	43.62
Solyc11g028340.1.1	Tomato	mitochondrion	3.77	42.19
Solyc11g028350.1.1	Tomato	mitochondrion	3.91	38.36
PGSC0003DMT400043995	Potato	mitochondrion	9.34	30.04
Solyc12g036030.1.1	Tomato	cytosol	3.63	27.08
Solyc11g028330.1.1	Tomato	cytosol	4.32	25.0

Protein Annotations

Gene3D:1.10.8.50	Gene3D:3.30.230.10	MapMan:35.1	UniProt:A0A287R8L1	GO:GO:0000166	GO:GO:0000902
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003916	GO:GO:0003918
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006265	GO:GO:0007049	GO:GO:0007275
GO:GO:0007389	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009330	GO:GO:0009653
GO:GO:0009719	GO:GO:0009741	GO:GO:0009987	GO:GO:0010026	GO:GO:0016043	GO:GO:0016787
GO:GO:0016853	GO:GO:0030154	GO:GO:0042023	GO:GO:0042802	GO:GO:0042803	GO:GO:0061505
InterPro:HATPase_C	InterPro:HATPase_C_sf	EnsemblPlantsGene:HORVU5Hr1G053310	EnsemblPlants:HORVU5Hr1G053310.1	InterPro:IPR014721	InterPro:IPR036890
HAMAP:MF_00322	PFAM:PD013790	PFAM:PF02518	PFAM:PF09239	PANTHER:PTHR10871	PANTHER:PTHR10871:SF4
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SUPFAM:SSF54211	SUPFAM:SSF55874	InterPro:TopoVI_B	InterPro:TopoVI_B_transducer
UniParc:UPI000B47014D	SEG:seg	:	:	:	:

Description

DNA topoisomerase 6 subunit B [Source:UniProtKB/TrEMBL;Acc:A0A287R8L1]

Coordinates

chrchr5H:-:417468225..417475209

Molecular Weight (calculated)

80453.5 Da

IEP (calculated)

9.610

GRAVY (calculated)

-0.441

Length

717 amino acids

Sequence
(BLAST)

001: MDDSSDGGAT AGSTKKKSAA AAAKGKATGK GKAASKAAPK SKESSLLKQK SPAEFFAENK NIAGFDNPGK SLYTTMRELV ENALDSAESI SELPDIEITI
101: EEITKSKFNT MIGLVDRERV DEALYDDFES SKAREKRLAK EARFQETQAK NAALGKKVKD TPAARGKGRG EASFFRVTCK DNGRGMPHED IPNMFGRVLS
201: GTKYGLRQTR GKFGLGAKMA LIWSKMSTGL PIDIKSSMKG QDYITFCRLD IDIHKNVPHI HLHEKRENNG HWHGAEIQVI IEGNWTTHRV SRISISFKNS
301: NSNLSLLSRF IIYSVQSRIL HYMRQMAVIT PYAQFLFRFL SDAAEKNLTI KFARRTDVMP PVPLLTKHHP SAVDLLLIKR LITDTTKPNL LQFLQHEFVN
401: ISKAHADRLI GEMGPDFNAK TTVNSLTSQQ LVRIHQLFRQ AKFDDPSGNC LSPAGEYNLR LGIIKELHPD LVATHASSPQ VFEGHPFIVE AGVSIGGKDV
501: KQGLNIFRFA NRIPLLFEQG ADVITRTALK RINWSIYKIN QQQDKIGVFV SIVSTKIPFK GTGKEYIGDD ITEIADAVKS ALKQCCVQLK SKIVKKLQAR
601: EQQDRKRNLN KYIPDVARTI METLGELADE SPPKRPRFDK EDEELLEKIN SEEVTEMTFR DCLTQHVEQV DYEMALEYAM QSGVSEEPRE AIYLNSLEGS
701: YKFVDFQSPA FVFRFIP

Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)

001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML

Arabidopsis Description

TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.