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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_02s0025g00410.t01
VIT_06s0004g01530.t01
VIT_08s0040g03250.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G20780.1 VIT_02s0025g00410.t01 AT1G63990.1 11410368
AT3G20780.1 VIT_06s0004g01530.t01 AT3G20780.1 16339310
AT3G20780.1 VIT_08s0040g03250.t01 AT5G02820.1 11410368
AT3G20780.1 VIT_08s0040g03250.t01 AT5G02820.1 16339310
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH23181 Soybean nucleus 84.55 84.55
Solyc01g014490.2.1 Tomato nucleus 82.32 82.44
AT3G20780.1 Thale cress cytosol 81.28 81.64
PGSC0003DMT400076882 Potato nucleus 37.0 81.37
CDY06380 Canola cytosol 79.94 80.54
CDY19605 Canola cytosol, plastid 80.53 79.12
Bra035745.1-P Field mustard cytosol, plastid 80.53 78.21
PGSC0003DMT400076881 Potato cytosol 46.95 77.07
PGSC0003DMT400031535 Potato cytosol 10.4 76.09
TraesCS5A01G173900.1 Wheat cytosol 77.12 75.22
Os09t0279600-01 Rice nucleus 77.71 75.14
TraesCS5D01G178400.1 Wheat cytosol, plastid 76.82 74.93
EER96475 Sorghum nucleus 76.67 74.57
GSMUA_Achr1P09300_001 Banana golgi, mitochondrion 76.97 73.68
PGSC0003DMT400049158 Potato cytosol 5.5 72.55
HORVU5Hr1G053310.1 Barley cytosol 76.82 72.11
Zm00001d019950_P001 Maize nucleus 68.05 71.01
PGSC0003DMT400068945 Potato cytosol, nucleus 8.47 70.37
TraesCS5B01G171400.1 Wheat nucleus 76.97 70.28
Solyc11g028340.1.1 Tomato mitochondrion 4.75 50.0
Solyc11g028300.1.1 Tomato cytosol 10.1 45.64
Solyc11g028350.1.1 Tomato mitochondrion 4.9 45.21
PGSC0003DMT400043995 Potato mitochondrion 10.4 31.39
Solyc11g028330.1.1 Tomato cytosol 5.2 28.23
Solyc12g036030.1.1 Tomato cytosol 3.71 26.04
Protein Annotations
Gene3D:1.10.8.50EntrezGene:100265632wikigene:100265632Gene3D:3.30.230.10MapMan:35.1ProteinID:CBI16435
ProteinID:CBI16435.3UniProt:D7SLA7EMBL:FN594951GO:GO:0000166GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003735GO:GO:0003824GO:GO:0003916GO:GO:0003918GO:GO:0005198
GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006139GO:GO:0006259
GO:GO:0006265GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009330
GO:GO:0009987GO:GO:0015935GO:GO:0016043GO:GO:0016787GO:GO:0016853GO:GO:0019538
GO:GO:0042254GO:GO:0042803GO:GO:0061505InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:IPR014721
InterPro:IPR036890EntrezGene:LOC100265632wikigene:LOC100265632HAMAP:MF_00322PFAM:PD013790PFAM:PF02518
PFAM:PF09239PANTHER:PTHR10871PANTHER:PTHR10871:SF4InterPro:Ribosomal_S13-like_H2THInterPro:Ribosomal_S5_D2-typ_foldInterPro:Ribosomal_S5_D2-typ_fold_subgr
SUPFAM:SSF46946SUPFAM:SSF54211SUPFAM:SSF55874TIGR:TC53807InterPro:TopoVI_BInterPro:TopoVI_B_transducer
UniParc:UPI00015C77E3ArrayExpress:VIT_06s0004g01530EnsemblPlantsGene:VIT_06s0004g01530EnsemblPlants:VIT_06s0004g01530.t01unigene:Vvi.284RefSeq:XP_002283111
RefSeq:XP_002283111.2RefSeq:XP_010651285.1SEG:seg:::
Description
DNA topoisomerase 6 subunit B [Source:UniProtKB/TrEMBL;Acc:D7SLA7]
Coordinates
chr6:+:1896260..1904036
Molecular Weight (calculated)
76093.4 Da
IEP (calculated)
9.581
GRAVY (calculated)
-0.512
Length
673 amino acids
Sequence
(BLAST)
001: METGGSSEIP TEPKKTKSKT ARKPKENPLK QKSPAEFFAE NKNIAGFDNP GKSLYTTVRE LVENSLDSAE SISELPEVEI TIEEIGKSKF NSMIGLVDRE
101: RIDEELYDDF ETAKAREKRL AKEARTQELQ AKNAALGKKV KEPQASKGMK GRGEASFYRV TCKDNGRGMP HDDIPNMFGR VLSGTKYGLK QTRGKFGLGA
201: KMALIWSKMS TGLPIEISSS MKGQSYISFC RLDIDIHRNI PHIHLHEKRD NKERWCGAEI QVVIEGNWTT YRSKILHYMR QMAVITPYAQ FLFKFVSDTS
301: DKNVTIRFAR RTDIMPPVPA ETKYHPSAVD LLLIKRLISE TSKENLLQFL QHEFVNIGKS YAERLIGEMG PDFSPKMAVK SLTSQQIVRI HQLFRQAKFD
401: DPSGDCLSPA GEYNLRLGII KELHPDMVAT YSGSAQVFEG HPFMVEAGVS IGGKDVKQGL NIFRFANRIP LLFEQGADVV TRTALKRINW NSYKINQAQD
501: KIGVFVSIVS TKIPFKGTGK EYIGDDISEI ASAVKSSIQQ CCIQLKSKIV KKIQARVQQE RKRNLSKYIP DATGAIYDVL REMAQLHASK KKRYEDEDAD
601: VLRKVSTHSI TKQTLSEKLA KHVEQVDYEM ALEYATQSGV SEEPREAIYL QSLEDGKNFI DFHSPVFAFR LYQ
Best Arabidopsis Sequence Match ( AT3G20780.1 )
(BLAST)
001: MAGDDLVETK KGSSKNSKDS NESKLKQKSP AEFFAENKNI AGFDNPGKSL YTTVRELVEN ALDSAESISE LPEVEVTIEE IVKSKFNSMI GLIDRERVDT
101: QLYDDYETEK ARGKRLAKEA RASEIQAKNL ASGKKNKEPG VSKVLKARGE ASYYKVTCKD NGKGMPHDDI PNMFGRVLSG TKYGLKQTRG KFGLGAKMAL
201: IWSKMSTGLP IEISSSMKSQ NYVTFCRLDI DIHRNIPHIH LHEKKGNKEK WHGAEIQVVI EGNWTTYRSK ILHYMRQMAV ITPYAQFLFR FISETPEKNV
301: TIKFTRRTDV MPPIPIETKH HPSSVDLLLI KRLITDTSKK TLLQFLQNEF VNINKTLAAR LIGEMGPDFG PSMAVKSVTS QQMVRIHQLF RQAKFDDPSG
401: DCLSPAGEYN LRLGIIKELH PDMVATYSGS AQVFEGHPFI VEAGVSLGGR DVKQGINIFR FANRIPLLFE QGADVVTRTA LKRINWNSYK INQTQDKIGV
501: FVSIVSTKIP FKGTGKEYIG DDISEIATAV KSAIQQCCIQ LKSKIVKRLQ AREQQERKRS LSRYIPDATG AVYEVLKQMT EEHKTKRKRY GEEDIVMLDK
601: VSKQIITKET LKEKLAEHVE QVDYEMALEY ATQSGVSEEP RENIYLQHLD PNKSNFIDLH SPTFVFRLML
Arabidopsis Description
TOP6BDNA topoisomerase 6 subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5V6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.