Factsheet for Os08t0156900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os09t0279600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63990.1	Os09t0279600-01	AT3G20780.1	11410368

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G296000.2	Wheat	nucleus	85.45	85.23
TraesCS7B01G201200.1	Wheat	cytosol	85.19	84.97
KXG24464	Sorghum	cytoskeleton, cytosol, nucleus, plastid	83.64	84.29
TraesCS7A01G300300.1	Wheat	nucleus	78.44	84.12
HORVU7Hr1G071060.1	Barley	cytosol, nucleus	84.94	80.54
Zm00001d049550_P001	Maize	cytosol	71.43	76.82
VIT_02s0025g00410.t01	Wine grape	nucleus, peroxisome, plastid	63.9	64.57
CDY34392	Canola	cytosol, nucleus, peroxisome	62.86	63.68
Bra027674.1-P	Field mustard	cytosol, nucleus, peroxisome	62.6	63.42
AT1G63990.1	Thale cress	cytosol, nucleus, peroxisome	62.86	63.19
CDY25553	Canola	cytosol, nucleus, peroxisome	62.34	63.16
KRH27888	Soybean	nucleus, plasma membrane, plastid	61.56	62.04
Solyc08g081590.1.1	Tomato	nucleus	38.18	58.57
PGSC0003DMT400031764	Potato	cytosol, nucleus, plastid	25.71	46.26
GSMUA_AchrUn_...	Banana	plasma membrane	69.09	44.78
Os03t0284800-01	Rice	nucleus	32.21	28.05
Os03t0752200-01	Rice	nucleus	23.64	23.88
Os12t0622500-01	Rice	nucleus	21.82	17.25

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.2.1.1	Gene3D:3.40.1360.10	EntrezGene:4344697	EMBL:AB219538	ProteinID:BAC99506.1
ProteinID:BAC99507.1	ProteinID:BAF22941.1	ProteinID:BAT03898.1	ProteinID:BAT03899.1	GO:GO:0000003	GO:GO:0000166
GO:GO:0000228	GO:GO:0000706	GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003918	GO:GO:0004518	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139
GO:GO:0006259	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009553	GO:GO:0009555	GO:GO:0009791	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016889	GO:GO:0042138	GO:GO:0046872	GO:GO:0046983
GO:GO:0048316	GO:GO:0051026	GO:GO:0051321	InterPro:IPR036388	EnsemblPlantsGene:Os08g0156900	EnsemblPlants:Os08t0156900-01
PFAM:PF04406	PRINTS:PR01550	PANTHER:PTHR10848	PANTHER:PTHR10848:SF1	UniProt:Q6ZD95	SUPFAM:SSF56726
InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	UniParc:UPI00001D8D29	InterPro:WH-like_DNA-bd_sf
RefSeq:XP_015650817.1	SEG:seg	:	:	:	:

Description

TOPOISOMERASE 6 SUBUNIT A2Spo11/DNA topoisomerase VI, subunit A family protein. (Os08t0156900-01);Similar to Topoisomerase 6 subunit A. (Os08t0156900-02)

Coordinates

chr8:-:3301039..3304257

Molecular Weight (calculated)

42743.1 Da

IEP (calculated)

8.859

GRAVY (calculated)

0.093

Length

385 amino acids

Sequence
(BLAST)

001: MAEAGVAAAS LFGADRRLCS ADILPPAEVR ARIEVAVLNF LAALTDPAAP AISALPLISR GAANRGLRRA LLRDDVSSVY LSYASCKRSL TRANDAKAFV
101: RVWKVMEMCY KILGEGKLVT LRELFYTLLS ESPTYFTCQR HVNQTVQDVV SLLRCTRQSL GIMASSRGAL IGRLVVQGPE EEHVDCSILG PSGHAITGDL
201: NVLSKLIFSS DARYIIVVEK DAIFQRLAED RIYSHLPCIL ITAKGYPDLA TRFILHRLSQ TYPNMPIFAL VDWNPAGLAI LCTYKYGSIS MGLESYRYAC
301: NVKWLGLRGD DLQLIPQSAY QELKPRDLQI AKSLLSSKFL QDKHRAELTL MLETGKRAEI EALYSHGFDF LGKYVARKIV QGDYI

Best Arabidopsis Sequence Match ( AT1G63990.1 )
(BLAST)

001: MEESSGLSSM KFFSDQHLSY ADILLPHEAR ARIEVSVLNL LRILNSPDPA ISDLSLINRK RSNSCINKGI LTDVSYIFLS TSFTKSSLTN AKTAKAFVRV
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD WNPAGLAILC TFKFGSIGMG LEAYRYACNV
301: KWIGLRGDDL NLIPEESLVP LKPKDSQIAK SLLSSKILQE NYIEELSLMV QTGKRAEIEA LYCHGYNYLG KYIATKIVQG KYI

Arabidopsis Description

SPO11-2Meiotic recombination protein SPO11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.