Factsheet for PGSC0003DMT400031764

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400031535
PGSC0003DMT400043995
PGSC0003DMT400049158
PGSC0003DMT400068945
PGSC0003DMT400076881
PGSC0003DMT400076882

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63990.1	PGSC0003DMT400031535	AT3G20780.1	11410368
AT1G63990.1	PGSC0003DMT400043995	AT3G20780.1	11410368
AT1G63990.1	PGSC0003DMT400049158	AT3G20780.1	11410368
AT1G63990.1	PGSC0003DMT400068945	AT3G20780.1	11410368
AT1G63990.1	PGSC0003DMT400076881	AT3G20780.1	11410368
AT1G63990.1	PGSC0003DMT400076882	AT3G20780.1	11410368

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g081590.1.1	Tomato	nucleus	57.01	48.61
VIT_02s0025g00410.t01	Wine grape	nucleus, peroxisome, plastid	60.75	34.12
KRH27888	Soybean	nucleus, plasma membrane, plastid	60.75	34.03
AT1G63990.1	Thale cress	cytosol, nucleus, peroxisome	59.35	33.16
Bra027674.1-P	Field mustard	cytosol, nucleus, peroxisome	55.14	31.05
CDY34392	Canola	cytosol, nucleus, peroxisome	55.14	31.05
CDY25553	Canola	cytosol, nucleus, peroxisome	54.67	30.79
TraesCS7A01G300300.1	Wheat	nucleus	48.13	28.69
Zm00001d049550_P001	Maize	cytosol	46.73	27.93
KXG24464	Sorghum	cytoskeleton, cytosol, nucleus, plastid	47.66	26.7
TraesCS7D01G296000.2	Wheat	nucleus	48.13	26.68
TraesCS7B01G201200.1	Wheat	cytosol	47.66	26.42
Os08t0156900-01	Rice	cytosol	46.26	25.71
HORVU7Hr1G071060.1	Barley	cytosol, nucleus	48.6	25.62
GSMUA_AchrUn_...	Banana	plasma membrane	50.93	18.35
PGSC0003DMT400057070	Potato	mitochondrion	13.08	15.22
PGSC0003DMT400071721	Potato	nucleus	21.96	11.22

Protein Annotations

Gene3D:3.40.1360.10	MapMan:35.1	GO:GO:0000003	GO:GO:0000166	GO:GO:0000737	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0007049
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009553	GO:GO:0009555
GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0048316	GO:GO:0051026	GO:GO:0051321
UniProt:M1AW70	PFAM:PF04406	EnsemblPlantsGene:PGSC0003DMG400012184	PGSC:PGSC0003DMG400012184	EnsemblPlants:PGSC0003DMT400031764	PANTHER:PTHR10848
PANTHER:PTHR10848:SF1	SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	UniParc:UPI000295FDAB

Description

Meiotic recombination protein SPO11 [Source:PGSC_GENE;Acc:PGSC0003DMG400012184]

Coordinates

chr8:-:55262425..55265313

Molecular Weight (calculated)

24361.5 Da

IEP (calculated)

4.829

GRAVY (calculated)

-0.126

Length

214 amino acids

Sequence
(BLAST)

001: MGEFCRSTIF FSDQHLCYAD ILPPSQEKRV TQRELYYKLL CDSPDYFTSQ LQVNRTIQDL VALLRCSRYS LGIMASSRGA IAGRLLLQEP DKEVVDCSTC
101: GSSGYAISGD LELLEKLTME TDARYIIMVE KWLGLRKDDI NQLIPEECLV PLKPRDLQIA KSLMSSEILQ DSYKEEVAAM VQSGRRAEIE ALYCHGYDYL
201: VKFLATKIVQ ANYL

Best Arabidopsis Sequence Match ( AT1G63990.2 )
(BLAST)

001: MEESSGLSSM KFFSDQHLSY ADILLPHEAR ARIEVSVLNL LRILNSPDPA ISDLSLINRK RSNSCINKGI LTDVSYIFLS TSFTKSSLTN AKTAKAFVRV
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD W

Arabidopsis Description

SPO11-2Meiotic recombination protein SPO11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.