Factsheet for PGSC0003DMT400071721

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400031535
PGSC0003DMT400043995
PGSC0003DMT400049158
PGSC0003DMT400068945
PGSC0003DMT400071721
PGSC0003DMT400076881
PGSC0003DMT400076882

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02820.1	PGSC0003DMT400031535	AT3G20780.1	11410368
AT5G02820.1	PGSC0003DMT400043995	AT3G20780.1	11410368
AT5G02820.1	PGSC0003DMT400049158	AT3G20780.1	11410368
AT5G02820.1	PGSC0003DMT400068945	AT3G20780.1	11410368
AT5G02820.1	PGSC0003DMT400076881	AT3G20780.1	11410368
AT5G02820.1	PGSC0003DMT400076882	AT3G20780.1	11410368
AT5G02820.1	PGSC0003DMT400031535	AT3G20780.1	16339310
AT5G02820.1	PGSC0003DMT400043995	AT3G20780.1	16339310
AT5G02820.1	PGSC0003DMT400049158	AT3G20780.1	16339310
AT5G02820.1	PGSC0003DMT400068945	AT3G20780.1	16339310
AT5G02820.1	PGSC0003DMT400076881	AT3G20780.1	16339310
AT5G02820.1	PGSC0003DMT400076882	AT3G20780.1	16339310
AT5G02820.1	PGSC0003DMT400071721	AT5G02820.1	16339310
AT5G02820.1	PGSC0003DMT400071721	AT5G02820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007210.2.1	Tomato	nucleus	63.72	99.63
VIT_08s0040g03250.t01	Wine grape	nucleus	84.25	84.05
KRH19789	Soybean	nucleus	83.29	83.69
KRH32381	Soybean	nucleus	83.53	83.53
CDX70343	Canola	nucleus	82.82	81.26
AT5G02820.1	Thale cress	nucleus	82.82	81.26
Bra009564.1-P	Field mustard	nucleus	83.05	81.12
CDY10421	Canola	nucleus	82.58	81.03
EER95053	Sorghum	plastid	70.64	67.89
Zm00001d028705_P001	Maize	plastid	70.17	67.43
Os03t0284800-01	Rice	nucleus	69.69	66.06
TraesCS4B01G198400.1	Wheat	nucleus, plastid	68.97	65.53
TraesCS4D01G199200.1	Wheat	nucleus, plastid	68.97	65.53
TraesCS4A01G105600.1	Wheat	nucleus	68.74	65.31
HORVU4Hr1G057310.1	Barley	nucleus, plastid	68.26	60.21
PGSC0003DMT400057070	Potato	mitochondrion	10.5	23.91
PGSC0003DMT400031764	Potato	cytosol, nucleus, plastid	11.22	21.96

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102606419	Gene3D:3.40.1360.10	MapMan:35.1	GO:GO:0000166	GO:GO:0000287
GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003916
GO:GO:0003918	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006265
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009330	GO:GO:0009957	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016853	GO:GO:0030154	GO:GO:0042802	GO:GO:0046872
GO:GO:0061505	InterPro:IPR036388	UniProt:M1CP72	HAMAP:MF_00132	PFAM:PF04406	EnsemblPlantsGene:PGSC0003DMG400027900
PGSC:PGSC0003DMG400027900	EnsemblPlants:PGSC0003DMT400071721	PRINTS:PR01550	PRINTS:PR01552	PANTHER:PTHR10848	PANTHER:PTHR10848:SF0
SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	InterPro:TopoVI_A
UniParc:UPI0002965646	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_006367265.1	SEG:seg	:	:

Description

Meiotic recombination protein spo11 [Source:PGSC_GENE;Acc:PGSC0003DMG400027900]

Coordinates

chr9:-:6754143..6755645

Molecular Weight (calculated)

46730.3 Da

IEP (calculated)

7.221

GRAVY (calculated)

-0.215

Length

419 amino acids

Sequence
(BLAST)

001: MADKKKRRRA AHDSDSDSES RPFQSKLKPD SVILQTLKAL KSSCSTTSKT LSLSDVGLSS TCREVADLPI DEVQSEIESL AFTIAKSILS GEGFSFSVPS
101: RSAANQLYVS ELDRIVLKDK SSARNFGNVS TVRKATITLR ILQLVHQLCT SNIHVTKRDL FYTDVKLFQD QTQSDAVLDD VSCIVGCTRS SLNVVAAEKG
201: VVVGRLIFSD NGDMIDCTKM GMGGKAIPPN IDRVGDMQSD ALYILLVEKD AAFMRLSEDR FYNRFPCIIV TAKGQPDVAT RLFLRKMKME LNLPVLALVD
301: SDPYGLKILS VYGCGSKNMS YDSANLTTPD IKWLGIRPSD LDKYKIPEQC RLPMTEQDIK TGKDLLEEDF VKKNPAWVEE LNLMVKTKQK AEIQALSSFG
401: FQYLSEVYLP LKLQEQDWL

Best Arabidopsis Sequence Match ( AT5G02820.1 )
(BLAST)

001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL

Arabidopsis Description

TOP6ADNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.