Factsheet for TraesCS4A01G105600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G105600.1
TraesCS4B01G198400.1
TraesCS4D01G199200.1
TraesCS5A01G173900.1
TraesCS5B01G171400.1
TraesCS5D01G178400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02820.1	TraesCS5A01G173900.1	AT3G20780.1	11410368
AT5G02820.1	TraesCS5B01G171400.1	AT3G20780.1	11410368
AT5G02820.1	TraesCS5D01G178400.1	AT3G20780.1	11410368
AT5G02820.1	TraesCS5A01G173900.1	AT3G20780.1	16339310
AT5G02820.1	TraesCS5B01G171400.1	AT3G20780.1	16339310
AT5G02820.1	TraesCS5D01G178400.1	AT3G20780.1	16339310
AT5G02820.1	TraesCS4A01G105600.1	AT5G02820.1	16339310
AT5G02820.1	TraesCS4B01G198400.1	AT5G02820.1	16339310
AT5G02820.1	TraesCS4D01G199200.1	AT5G02820.1	16339310
AT5G02820.1	TraesCS4A01G105600.1	AT5G02820.1	21798944
AT5G02820.1	TraesCS4B01G198400.1	AT5G02820.1	21798944
AT5G02820.1	TraesCS4D01G199200.1	AT5G02820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G198400.1	Wheat	nucleus, plastid	99.77	99.77
TraesCS4D01G199200.1	Wheat	nucleus, plastid	99.55	99.55
HORVU4Hr1G057310.1	Barley	nucleus, plastid	98.64	91.58
Os03t0284800-01	Rice	nucleus	90.25	90.05
Zm00001d028705_P001	Maize	plastid	88.89	89.91
EER95053	Sorghum	plastid	88.44	89.45
KRH19789	Soybean	nucleus	65.31	69.06
KRH32381	Soybean	nucleus	65.53	68.97
VIT_08s0040g03250.t01	Wine grape	nucleus	65.53	68.81
PGSC0003DMT400071721	Potato	nucleus	65.31	68.74
AT5G02820.1	Thale cress	nucleus	66.21	68.38
CDY10421	Canola	nucleus	65.53	67.68
CDX70343	Canola	nucleus	65.08	67.21
Bra009564.1-P	Field mustard	nucleus	65.31	67.13
Solyc09g007210.2.1	Tomato	nucleus	36.51	60.07
TraesCS7A01G300300.1	Wheat	nucleus	25.4	31.2
TraesCS5A01G391400.2	Wheat	nucleus	26.08	28.82

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.1360.10	MapMan:35.1	GO:GO:0000166	GO:GO:0000737	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003918	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0006139	GO:GO:0006259	GO:GO:0006265	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009957	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0030154	GO:GO:0042802
InterPro:IPR036388	HAMAP:MF_00132	PFAM:PF04406	PRINTS:PR01550	PRINTS:PR01552	PANTHER:PTHR10848
PANTHER:PTHR10848:SF0	SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11
InterPro:TopoVI_A	EnsemblPlantsGene:TraesCS4A01G105600	EnsemblPlants:TraesCS4A01G105600.1	InterPro:WH-like_DNA-bd_sf	TIGR:cd00223	SEG:seg

Description

No Description!

Coordinates

chr4A:+:119781719..119783044

Molecular Weight (calculated)

48200.0 Da

IEP (calculated)

9.626

GRAVY (calculated)

-0.125

Length

441 amino acids

Sequence
(BLAST)

001: MSERKRRAGA DAAAGGSTSK KPRGASAAAS YAQSLRSKLR PDASILASLR ALASAASKSK PAAASSAGAK ALSEDDPASA SSNYIVVADQ DTTSVTSRIN
101: RLVLSVARSI LAGRGFSFAV PSRASSNQVY LPDLDRIVLL RRESARPFAN VATARKATVT ARVLSLVHAV LRRGIHVTKR DLFYTDVKLF GDQSQSDAIL
201: DDVSCMLGCT RSSLHVVASE KGVVVGRLTF ADDGDVIDCT RMGVGGKAIP PNIDRVSGIE SDALFILLVE KDAAFMRLAE DRFYNRFPCI ILTAKGQPDV
301: ATRLFLRRLK VELKLPVLAL VDSDPYGLKI LSVYMCGSKN MSYDSANLTT PDIKWLGVRP SDLDKYRVPE QCRLPMTDHD IKVGKEMLEE DFVKQNEGWV
401: KELETMLRTK QKAEIQALSS FGFQYLTEVY LPLKLQQEDW I

Best Arabidopsis Sequence Match ( AT5G02820.1 )
(BLAST)

001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL

Arabidopsis Description

TOP6ADNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.