Factsheet for Bra009564.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009564.1-P
Bra035745.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02820.1	Bra035745.1-P	AT3G20780.1	11410368
AT5G02820.1	Bra035745.1-P	AT3G20780.1	16339310
AT5G02820.1	Bra009564.1-P	AT5G02820.1	16339310
AT5G02820.1	Bra009564.1-P	AT5G02820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70343	Canola	nucleus	99.3	99.77
CDY10421	Canola	nucleus	98.14	98.59
AT5G02820.1	Thale cress	nucleus	95.57	96.02
VIT_08s0040g03250.t01	Wine grape	nucleus	83.92	85.71
KRH32381	Soybean	nucleus	82.98	84.96
KRH19789	Soybean	nucleus	82.28	84.65
PGSC0003DMT400071721	Potato	nucleus	81.12	83.05
Solyc09g007210.2.1	Tomato	nucleus	47.55	76.12
EER95053	Sorghum	plastid	68.3	67.2
Zm00001d028705_P001	Maize	plastid	67.83	66.74
Os03t0284800-01	Rice	nucleus	68.3	66.29
TraesCS4B01G198400.1	Wheat	nucleus, plastid	67.37	65.53
TraesCS4D01G199200.1	Wheat	nucleus, plastid	67.37	65.53
TraesCS4A01G105600.1	Wheat	nucleus	67.13	65.31
HORVU4Hr1G057310.1	Barley	nucleus, plastid	66.67	60.21
Bra039374.1-P	Field mustard	cytosol	28.44	33.7
Bra027674.1-P	Field mustard	cytosol, nucleus, peroxisome	27.04	30.53

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.1360.10	MapMan:35.1	EnsemblPlantsGene:Bra009564	EnsemblPlants:Bra009564.1	EnsemblPlants:Bra009564.1-P
GO:GO:0000166	GO:GO:0000287	GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003916	GO:GO:0003918	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139
GO:GO:0006259	GO:GO:0006265	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009330
GO:GO:0009957	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016853	GO:GO:0030154
GO:GO:0042802	GO:GO:0046872	GO:GO:0061505	InterPro:IPR036388	UniProt:M4CZB7	HAMAP:MF_00132
PFAM:PF04406	PRINTS:PR01550	PRINTS:PR01552	PANTHER:PTHR10848	PANTHER:PTHR10848:SF0	SUPFAM:SSF56726
InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	InterPro:TopoVI_A	UniParc:UPI0002547C39
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

AT5G02820 (E=1e-213) RHL2, BIN5 | RHL2 (ROOT HAIRLESS 2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ identical protein binding / protein binding

Coordinates

chrA10:-:17236447..17237879

Molecular Weight (calculated)

47661.8 Da

IEP (calculated)

7.951

GRAVY (calculated)

-0.147

Length

429 amino acids

Sequence
(BLAST)

001: MADKKKRKRT KEDKDEDLPF KSILESDEAI LKLLKSYISS SLTAAAAGSS GASSSSSSKP LTLADLSLSS SCREVADLSL SSVQTEIETV IVQIARSILA
101: GDGFSFSVPS RAASNQLYVP ELDRIVLKDK STLRPFASVS SVRKTTITTR ILALIHQLCL RNIHVTKRDL FYTDVKLFQD QTQSDAVLDD VSCMLGCTRS
201: SLNVIAAEKG VVVGRLIFSD NGDMIDCTKM GMGGKAIPPN IDRVGDMQSD AMFILLVEKD AAYIRLAEDR FYNRFPCIIV TAKGQPDVAT RLFLRKMKME
301: LKLPVLALVD SDPYGLKILS VYGCGSKNMS YDSANLTTPD IKWLGIRPSD LDKYKIPEQC RLPMTEQDIK TGKDMLEEDF VKKNPGWVEE LNLMVKTKQK
401: AEIQALSSFG FQYLSEVYLP LKLQQQDWL

Best Arabidopsis Sequence Match ( AT5G02820.1 )
(BLAST)

001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL

Arabidopsis Description

TOP6ADNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.