CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70343
CDY06380
CDY10421
CDY19605

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02820.1	CDY06380	AT3G20780.1	11410368
AT5G02820.1	CDY19605	AT3G20780.1	11410368
AT5G02820.1	CDY06380	AT3G20780.1	16339310
AT5G02820.1	CDY19605	AT3G20780.1	16339310
AT5G02820.1	CDX70343	AT5G02820.1	16339310
AT5G02820.1	CDY10421	AT5G02820.1	16339310
AT5G02820.1	CDX70343	AT5G02820.1	21798944
AT5G02820.1	CDY10421	AT5G02820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009564.1-P	Field mustard	nucleus	99.77	99.3
CDY10421	Canola	nucleus	98.36	98.36
AT5G02820.1	Thale cress	nucleus	95.78	95.78
VIT_08s0040g03250.t01	Wine grape	nucleus	84.07	85.48
KRH32381	Soybean	nucleus	83.14	84.73
KRH19789	Soybean	nucleus	82.44	84.41
PGSC0003DMT400071721	Potato	nucleus	81.26	82.82
Solyc09g007210.2.1	Tomato	nucleus	47.54	75.75
EER95053	Sorghum	plastid	68.38	66.97
Zm00001d028705_P001	Maize	plastid	67.92	66.51
Os03t0284800-01	Rice	nucleus	68.38	66.06
TraesCS4B01G198400.1	Wheat	nucleus, plastid	67.45	65.31
TraesCS4D01G199200.1	Wheat	nucleus, plastid	67.45	65.31
TraesCS4A01G105600.1	Wheat	nucleus	67.21	65.08
HORVU4Hr1G057310.1	Barley	nucleus, plastid	66.74	60.0
CDY43366	Canola	cytosol	28.57	33.7
CDY24207	Canola	cytosol	28.1	33.15
CDY25553	Canola	cytosol, nucleus, peroxisome	27.4	30.79
CDY34392	Canola	cytosol, nucleus, peroxisome	27.17	30.53

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.1360.10	MapMan:35.1	GO:A0A078C5R6	EnsemblPlants:CDX70343	ProteinID:CDX70343
ProteinID:CDX70343.1	GO:GO:0000166	GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003918	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006265	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00136502001
InterPro:IPR036388	HAMAP:MF_00132	PFAM:PF04406	PRINTS:PR01550	PRINTS:PR01552	PANTHER:PTHR10848
PANTHER:PTHR10848:SF0	SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N	InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11
InterPro:TopoVI_A	UniParc:UPI0004EEEA80	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

BnaA10g26920D

Coordinates

chrLK031790:-:4191035..4192542

Molecular Weight (calculated)

47460.5 Da

IEP (calculated)

7.646

GRAVY (calculated)

-0.149

Length

427 amino acids

Sequence
(BLAST)

001: MADKKKPKRT KEDKDEDLPF KSILESDEAI LKLLKSYISS SLTAAGSSGA SSSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YIRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL

Best Arabidopsis Sequence Match ( AT5G02820.1 )
(BLAST)

001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL

Arabidopsis Description

TOP6ADNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.