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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • cytosol 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra027674.1-P Field mustard cytosol, nucleus, peroxisome 91.91 92.63
CDY34392 Canola cytosol, nucleus, peroxisome 91.38 92.11
CDY25553 Canola cytosol, nucleus, peroxisome 90.08 90.79
VIT_02s0025g00410.t01 Wine grape nucleus, peroxisome, plastid 73.89 74.28
KRH27888 Soybean nucleus, plasma membrane, plastid 73.89 74.08
Solyc08g081590.1.1 Tomato nucleus 44.39 67.73
KXG24464 Sorghum cytoskeleton, cytosol, nucleus, plastid 63.97 64.14
TraesCS7D01G296000.2 Wheat nucleus 63.45 62.95
Os08t0156900-01 Rice cytosol 63.19 62.86
TraesCS7B01G201200.1 Wheat cytosol 63.19 62.69
TraesCS7A01G300300.1 Wheat nucleus 58.49 62.4
HORVU7Hr1G071060.1 Barley cytosol, nucleus 63.45 59.85
PGSC0003DMT400031764 Potato cytosol, nucleus, plastid 33.16 59.35
Zm00001d049550_P001 Maize cytosol 55.09 58.94
GSMUA_AchrUn_... Banana plasma membrane 64.23 41.41
AT3G13170.1 Thale cress cytosol 24.8 26.24
AT5G02820.1 Thale cress nucleus 29.24 26.23
Protein Annotations
Gene3D:1.10.10.10MapMan:13.3.6.2.1.1Gene3D:3.40.1360.10EntrezGene:842702ProteinID:AAF24569.1ProteinID:AEE34178.1
EMBL:AJ251990ProteinID:ANM57840.1ArrayExpress:AT1G63990EnsemblPlantsGene:AT1G63990RefSeq:AT1G63990TAIR:AT1G63990
RefSeq:AT1G63990-TAIR-GEnsemblPlants:AT1G63990.1TAIR:AT1G63990.1Unigene:At.48342EMBL:DQ446392GO:GO:0000003
GO:GO:0000166GO:GO:0000228GO:GO:0000706GO:GO:0000737GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003824GO:GO:0003918GO:GO:0004518GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005694
GO:GO:0006139GO:GO:0006259GO:GO:0006950GO:GO:0007049GO:GO:0007275GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009553GO:GO:0009555GO:GO:0009791GO:GO:0009987
GO:GO:0016043GO:GO:0016787GO:GO:0016853GO:GO:0016889GO:GO:0046872GO:GO:0048316
GO:GO:0051026GO:GO:0051321GO:GO:0061505InterPro:IPR036388RefSeq:NP_001320320.1RefSeq:NP_176582.2
PFAM:PF04406PO:PO:0000293PRINTS:PR01550PANTHER:PTHR10848PANTHER:PTHR10848:SF1UniProt:Q9M4A1
Symbol:SPO11-2SUPFAM:SSF56726InterPro:Spo11/TopoVI_AInterPro:Spo11/TopoVI_A_NInterPro:Spo11/TopoVI_A_sfInterPro:TOPRIM_Topo6A/Spo11
UniParc:UPI00000A9A7DInterPro:WH-like_DNA-bd_sfSEG:seg:::
Description
SPO11-2Meiotic recombination protein SPO11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4A1]
Coordinates
chr1:-:23742842..23745385
Molecular Weight (calculated)
43128.6 Da
IEP (calculated)
8.385
GRAVY (calculated)
0.088
Length
383 amino acids
Sequence
(BLAST)
001: MEESSGLSSM KFFSDQHLSY ADILLPHEAR ARIEVSVLNL LRILNSPDPA ISDLSLINRK RSNSCINKGI LTDVSYIFLS TSFTKSSLTN AKTAKAFVRV
101: WKVMEICFQI LLQEKRVTQR ELFYKLLCDS PDYFSSQIEV NRSVQDVVAL LRCSRYSLGI MASSRGLVAG RLFLQEPGKE AVDCSACGSS GFAITGDLNL
201: LDNTIMRTDA RYIIIVEKHA IFHRLVEDRV FNHIPCVFIT AKGYPDIATR FFLHRMSTTF PDLPILVLVD WNPAGLAILC TFKFGSIGMG LEAYRYACNV
301: KWIGLRGDDL NLIPEESLVP LKPKDSQIAK SLLSSKILQE NYIEELSLMV QTGKRAEIEA LYCHGYNYLG KYIATKIVQG KYI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.