Factsheet for Os12t0622500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0284800-01	Rice	nucleus	23.0	25.34
Os03t0752200-01	Rice	nucleus	18.69	23.88
Os08t0156900-01	Rice	cytosol	17.25	21.82
TraesCS3D01G170600.1	Wheat	cytosol	17.25	20.95

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.1360.10	MapMan:35.1	EntrezGene:4352826	EMBL:AB219540	ProteinID:ABA99412.2
EMBL:AK101363	ProteinID:BAF30326.1	ProteinID:BAT18151.1	ProteinID:EAZ21266.1	GO:GO:0000003	GO:GO:0000166
GO:GO:0000228	GO:GO:0000706	GO:GO:0000737	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003918	GO:GO:0004518	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139
GO:GO:0006259	GO:GO:0006265	GO:GO:0006302	GO:GO:0006464	GO:GO:0006511	GO:GO:0006950
GO:GO:0007049	GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016043	GO:GO:0016579	GO:GO:0016787	GO:GO:0016853	GO:GO:0016889	GO:GO:0019538
GO:GO:0030957	GO:GO:0036459	GO:GO:0042138	GO:GO:0042803	GO:GO:0046872	EMBL:GU177866
InterPro:IPR036388	EnsemblPlantsGene:Os12g0622500	EnsemblPlants:Os12t0622500-01	PFAM:PF04406	PRINTS:PR01550	PRINTS:PR01552
PANTHER:PTHR10848	PANTHER:PTHR10848:SF3	UniProt:Q2QM00	SUPFAM:SSF56726	InterPro:Spo11/TopoVI_A	InterPro:Spo11/TopoVI_A_N
InterPro:Spo11/TopoVI_A_sf	InterPro:TOPRIM_Topo6A/Spo11	InterPro:TopoVI_A	UniParc:UPI0000D89E9E	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_015618337.1
SEG:seg	:	:	:	:	:

Description

TOPOISOMERASE 6 SUBUNIT ASpo11/DNA topoisomerase VI, subunit A family protein. (Os12t0622500-01)

Coordinates

chr12:+:26578011..26580981

Molecular Weight (calculated)

55345.3 Da

IEP (calculated)

5.696

GRAVY (calculated)

-0.546

Length

487 amino acids

Sequence
(BLAST)

001: MDDSTDDDSY HPRKHYAYDR QVSSSRWRTS REYIRGPGPE THTTESAQDG QDPPAGVYSY GYFSGSGNDP QVQGHFVPEI QKYNPYVIFK GEQLPVPIWE
101: LPEEKVQDFH DRYFIAKDKS RVEARKTLNR LLEGNINTIE RGHGYKFNIP KYTDNMEFNE EVKVSLAKAG KTISRSFCNA NQREVASRTG YTIDLIERTL
201: GAGLNISKRT VLYTNKDLFG DQSKSDQAIN DICALTNIRR GSLGIIAAEK GIVVGNIFLE LTNGKSISCS IGVQIPHRLD QIKDVCVEIG SRNIEYILVV
301: EKHTMLNYLL EMDYHTNNNC IILTGCGMPT LQTRDFLRFL KQRTGLPVFG LCDPDPEGIS ILATYARGSC NSAYDNFNIS VPSICWVGLS SSDMIKLNLS
401: ETNYSRLSRE DKTMLKNLWQ DDLSDVWKRR IEEMISFDKK ASFEAIHSLG FDYFATNLLP DMINKVREGY VQVQEKKEPQ DTEASED

Best Arabidopsis Sequence Match ( AT5G02820.1 )
(BLAST)

001: MADKKKRKRS KDDEAEELPF KSILESDDVI TELLKSYISS SIKAAAGAGG ASSSSSKPLT LADLSLSSSC REVADLSLSS VQTEIETVIV QIARSILAGD
101: GFSFSVPSRA ASNQLYVPEL DRIVLKDKST LRPFASVSSV RKTTITTRIL ALIHQLCLRN IHVTKRDLFY TDVKLFQDQT QSDAVLDDVS CMLGCTRSSL
201: NVIAAEKGVV VGRLIFSDNG DMIDCTKMGM GGKAIPPNID RVGDMQSDAM FILLVEKDAA YMRLAEDRFY NRFPCIIVTA KGQPDVATRL FLRKMKMELK
301: LPVLALVDSD PYGLKILSVY GCGSKNMSYD SANLTTPDIK WLGIRPSDLD KYKIPEQCRL PMTEQDIKTG KDMLEEDFVK KNPGWVEELN LMVKTKQKAE
401: IQALSSFGFQ YLSEVYLPLK LQQQDWL

Arabidopsis Description

TOP6ADNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.