Subcellular Localization
min:
: max
Winner_takes_all: vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G038830.1 | Barley | cytosol | 77.0 | 81.91 |
| TraesCS6A01G202600.1 | Wheat | cytosol | 77.0 | 78.57 |
| TraesCS3A01G502400.1 | Wheat | cytosol | 80.0 | 76.92 |
| TraesCS2A01G132800.1 | Wheat | cytosol, extracellular, vacuole | 75.0 | 76.53 |
| TraesCS4A01G427800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 75.0 | 76.53 |
| GRMZM5G887911_P01 | Maize | endoplasmic reticulum, extracellular | 54.0 | 75.0 |
| CDY45553 | Canola | endoplasmic reticulum, plasma membrane | 68.0 | 40.48 |
| ATMG00285.1 | Thale cress | endoplasmic reticulum | 69.0 | 35.94 |
| OQU89126 | Sorghum | cytosol | 74.0 | 32.89 |
| KRH76174 | Soybean | plasma membrane, vacuole | 59.0 | 29.65 |
| Solyc03g061540.1.1 | Tomato | extracellular | 33.0 | 29.46 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G117000.1 | EnsemblPlantsGene:TraesCS5A01G117000 | InterPro:ND/Mrp_mem | PANTHER:PTHR22773 | PANTHER:PTHR22773:SF102 | PFAM:PF00361 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:238828456..238828758
Molecular Weight (calculated)
11629.4 Da
IEP (calculated)
5.818
GRAVY (calculated)
0.478
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MCFDFFEKER FDASEFIVLI PLPTRSMLLM IPAHDLIAMY LAIELQSLCF YVIASSKRKS EFSTEAGSKY LILGAFPSGI IVRVRPDYYR SIFWNLFIDL
001: MKAEFVRILP HMFNLFLAVS PEIFIINATS ILLIHGVVFS TSKKYDYPPL ASNVGWLGLL SVLITLLLLA AGAPLLTIAH LFWNNLFRRD NFTYFCQIFL
101: LLSTAGTISM CFDSSDQERF DAFEFIVLIP LPTRGMLFMI SAHDLIAMYL AIEPQSLCFY VIAASKRKSE FSTEAGSKYL ILGAFSSGIL LF
101: LLSTAGTISM CFDSSDQERF DAFEFIVLIP LPTRGMLFMI SAHDLIAMYL AIEPQSLCFY VIAASKRKSE FSTEAGSKYL ILGAFSSGIL LF
Arabidopsis Description
NAD2ANADH dehydrogenase 2A [Source:TAIR;Acc:ATMG00285]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.