Factsheet for TraesCS5A01G492700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G542100.1	Wheat	nucleus	32.04	52.73
TraesCS5A01G492600.1	Wheat	nucleus	40.33	51.77
TraesCS4A01G412000.1	Wheat	nucleus	29.28	50.48
TraesCS7A01G541700.1	Wheat	nucleus	30.39	50.0
TraesCS7A01G541800.1	Wheat	nucleus	29.28	49.07
TraesCS5A01G492800.1	Wheat	nucleus	32.04	44.62
KXG39278	Sorghum	nucleus	32.04	44.27
OQU92524	Sorghum	cytosol	33.15	43.8
TraesCS5A01G217500.1	Wheat	nucleus	37.02	43.51
TraesCS7A01G542400.1	Wheat	nucleus	27.62	42.37
EER92201	Sorghum	nucleus	28.73	41.94
TraesCS7A01G541900.1	Wheat	nucleus	27.07	41.88
TraesCS7A01G542300.1	Wheat	nucleus	27.07	41.53
TraesCS5A01G217400.1	Wheat	nucleus	27.07	39.52
Zm00001d020573_P001	Maize	nucleus	33.15	39.22
Zm00001d020574_P001	Maize	nucleus	33.15	39.22
Zm00001d020575_P001	Maize	nucleus	33.15	39.22
TraesCS4A01G037300.1	Wheat	nucleus	28.18	38.93
TraesCS7A01G541600.1	Wheat	nucleus	24.31	37.61
TraesCS5A01G526100.1	Wheat	nucleus	24.86	37.19
EER98944	Sorghum	nucleus	31.49	36.08
Zm00001d005786_P001	Maize	nucleus	26.52	35.04
Zm00001d005787_P001	Maize	nucleus	26.52	35.04
OQU92525	Sorghum	nucleus	27.62	33.78
GSMUA_Achr10P...	Banana	nucleus	24.86	31.47
TraesCS5A01G542800.1	Wheat	nucleus	19.89	29.75
TraesCS2A01G312200.1	Wheat	nucleus	23.2	27.63
TraesCS7A01G542200.1	Wheat	nucleus	25.97	20.26

Protein Annotations

EnsemblPlants:TraesCS5A01G492700.1	EnsemblPlantsGene:TraesCS5A01G492700	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF311	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	MapMan:15.5.15	:	:

Description

No Description!

Coordinates

chr5A:-:662052508..662053053

Molecular Weight (calculated)

19392.7 Da

IEP (calculated)

8.846

GRAVY (calculated)

-0.712

Length

181 amino acids

Sequence
(BLAST)

001: MLTRTLTIHS VARMEQLTSD DCQQEDELNL GLTLLTTAAT EPGVGFFLCV YCDRKFRSSQ ALGGHQNAHK HERSVAKRRQ LIAAATRVGA RAAAQDERQP
101: GYHPGGGGDF MSAAGKARKT AAGKAHKHDR SSPEYDDGAD NVDLSMAGKA RKTAAGKAHK HGRGSSEYGD GADDMDLSLR L

Best Arabidopsis Sequence Match ( AT5G10970.1 )
(BLAST)

001: MDSSSGKPRS SDSSCIISAS TSLQFSDSPK LSLENYNIDT VAAQEEDDHD QKEGVEGIKL DLMLAGYDSS QPQLNQELNL LDCLETGVVT PSFNGSTSTE
101: QKLFSCNYCQ RTFYSSQALG GHQNAHKRER TLAKRGQRMA SAAAFGHPYG FAPVPFHGQY SNRTLGIQAH SMSHKPSSYN VYGGEYGQIN WSRIPLVQQP
201: AIAKLTSTEN HYNHHQMMIA PPLTSTCENI GRFDVGRIPV EFPTSELWQR GEELLKPAEE EKQKNLDLSL KL

Arabidopsis Description

C2H2 and C2HC zinc fingers superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LEU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.