Factsheet for TraesCS6D01G247400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22160430
golgi: 25769308
plastid: 27562633

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 27562633 doi

W Xu, H Lv, M Zhao, Y Li, Y Qi, Z Peng, G Xia, M Wang

Bio-Tech Research Center, Shandong Academy of Agricultural Science, Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crop, Jinan, 250100, China., The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, 27 Shandanan Road, Jinan, Shandong 250100, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G267300.1	Wheat	plastid	99.5	99.5
TraesCS6B01G294700.1	Wheat	plastid	99.5	99.5
Os02t0698000-01	Rice	extracellular, plastid	92.33	92.56
Zm00001d017711_P001	Maize	plastid	91.09	90.86
HORVU6Hr1G067660.4	Barley	plastid	98.76	88.47
KXG30947	Sorghum	plastid	89.36	86.57
Zm00001d000164_P001	Maize	plastid	87.62	85.3
TraesCS7D01G260200.1	Wheat	cytosol	18.81	15.97
TraesCS4D01G098900.1	Wheat	cytosol	18.81	15.54
TraesCS5D01G292700.1	Wheat	plastid	18.07	14.17
TraesCS1D01G280900.1	Wheat	plastid	7.18	9.83

Protein Annotations

KEGG:00710+2.7.1.19	MapMan:1.2.11	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0008974
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	InterPro:P-loop_NTPase	PFAM:PF00485	PRINTS:PR00478
InterPro:PRK	InterPro:PRK/URK	ScanProsite:PS00567	PANTHER:PTHR10285	PANTHER:PTHR10285:SF120	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS6D01G247400	EnsemblPlants:TraesCS6D01G247400.1	TIGR:cd02026	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:-:350928337..350930211

Molecular Weight (calculated)

45143.9 Da

IEP (calculated)

5.911

GRAVY (calculated)

-0.302

Length

404 amino acids

Sequence
(BLAST)

001: MAFCSPHTTT SLRSPCTTIP NSGFRQNQVI FFTTRSSRRS NTRHGARTFQ VSCAVEQPIV IGLAADSGCG KSTFMRRLTS VFGGAAEPPK GGNPDSNTLI
101: SDTTTVICLD DYHSLDRTGR KEKGVTALDP KANDFDLMYE QVKAIKEGKA IEKPIYNHVT GLLDPAELIQ PPKIFVIEGL HPMYDERVRE LLDFSIYLDI
201: SNEVKFAWKI QRDMAERGHS LESIKASIEA RKPDFDAFID PQKQYADAVI EVLPTQLIPD DNEGKVLRVK LIMKEGIKFF NPVYLFDEGS TINWIPCGRK
301: LTCSYPGIKF SYGPDTYFGQ EVSVLEMDGQ FDRLDELIYV ESHLSNLSTK FYGEVTQQML KHADFPGSNN GTGLFQTIVG LKIRDLYEQI IAERAGVPAE
401: AAKV

Best Arabidopsis Sequence Match ( AT1G32060.1 )
(BLAST)

001: MAVSTIYSTQ ALNSTHFLTS SSSSKQVFLY RRQPQTNRRF NTLITCAQET IVIGLAADSG CGKSTFMRRL TSVFGGAAKP PKGGNPDSNT LISDTTTVIC
101: LDDYHSLDRY GRKEQKVTAL DPRANDFDLM YEQVKALKNG IAVEKPIYNH VTGLLDPPEL IQPPKILVIE GLHPMFDERV RDLLDFSIYL DISNEVKFAW
201: KIQRDMAERG HSLESIKASI EARKPDFDAF IDPQKQYADA VIEVLPTTLI PDDNEGKVLR VRLIMKEGVK YFSPVYLFDE GSTISWIPCG RKLTCSYPGI
301: KFNYEPDSYF DHEVSVLEMD GQFDRLDELI YVESHLSNLS TKFYGEVTQQ MLKHADFPGS NNGTGLFQTI VGLKIRDLYE QLIANKATAR AEAKA

Arabidopsis Description

PRKPhosphoribulokinase [Source:UniProtKB/TrEMBL;Acc:A0A178WLP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.