Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G528200.1 | Wheat | nucleus | 54.46 | 55.45 |
| TraesCS7D01G528100.1 | Wheat | nucleus | 49.11 | 50.93 |
| TraesCS7D01G528000.1 | Wheat | nucleus | 51.79 | 47.93 |
| TraesCS4D01G309800.1 | Wheat | nucleus | 51.79 | 46.03 |
| TraesCS7D01G527800.1 | Wheat | nucleus | 42.86 | 44.86 |
| EER92201 | Sorghum | nucleus | 45.54 | 41.13 |
| KXG39278 | Sorghum | nucleus | 47.32 | 40.46 |
| TraesCS4D01G316100.1 | Wheat | nucleus | 48.21 | 38.57 |
| Zm00001d005787_P001 | Maize | nucleus | 46.43 | 37.96 |
| Zm00001d005786_P001 | Maize | nucleus | 46.43 | 37.96 |
| TraesCS5D01G225500.1 | Wheat | nucleus | 40.18 | 36.29 |
| OQU92525 | Sorghum | nucleus | 47.32 | 35.81 |
| OQU92524 | Sorghum | cytosol | 42.86 | 35.04 |
| Zm00001d020575_P001 | Maize | nucleus | 47.32 | 34.64 |
| Zm00001d020574_P001 | Maize | nucleus | 47.32 | 34.64 |
| Zm00001d020573_P001 | Maize | nucleus | 47.32 | 34.64 |
| TraesCS4D01G269600.1 | Wheat | nucleus | 41.07 | 34.59 |
| EER98944 | Sorghum | nucleus | 47.32 | 33.54 |
| GSMUA_Achr10P... | Banana | nucleus | 40.18 | 31.47 |
| TraesCS5D01G225600.1 | Wheat | nucleus | 41.07 | 30.26 |
| TraesCS4D01G316000.1 | Wheat | nucleus | 36.61 | 29.71 |
| TraesCS7A01G542200.1 | Wheat | nucleus | 60.71 | 29.31 |
| TraesCS2D01G310500.1 | Wheat | nucleus | 35.71 | 26.67 |
| TraesCS4D01G340000.1 | Wheat | nucleus | 30.36 | 26.36 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G527900.1 | EnsemblPlantsGene:TraesCS7D01G527900 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF311 | PFAM:PF13912 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr7D:+:623027354..623027692
Molecular Weight (calculated)
12239.5 Da
IEP (calculated)
8.094
GRAVY (calculated)
-0.637
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQPSNEQDG LSLELTLAAD VGVAPVEPGF FLCVYCNRRF RTSQALGGHQ NAHKQEREVA KRRRDAAAAM RPSPAWKAAA RMPEEPAAGG MAHKHGSSCR
101: ESNPELDLSL RL
101: ESNPELDLSL RL
001: MELNLSTPTS CSSSSISSSS HEAIPRTKGK TKEEVTAEPS KENQQRLEFR FLFNESSTRN EAKARVFACT FCKKEFSTSQ ALGGHQNAHK QERSLAKRRK
101: EIEINYPELS IYSQYPPSGL SFSSSSSQYD LGVRYNPNIA KTTKPYPFNI FACRFGYRGG LNFPPMSHLS VPKTDDLSIN LISNLEGSIH DQAVKKDQPE
201: ADPCKDSDID LSLKL
101: EIEINYPELS IYSQYPPSGL SFSSSSSQYD LGVRYNPNIA KTTKPYPFNI FACRFGYRGG LNFPPMSHLS VPKTDDLSIN LISNLEGSIH DQAVKKDQPE
201: ADPCKDSDID LSLKL
Arabidopsis Description
C2H2 and C2HC zinc fingers superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LZW0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.