Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G113090.1 | Barley | nucleus | 85.54 | 82.56 |
| TraesCS5D01G491500.1 | Wheat | nucleus | 83.73 | 80.81 |
| HORVU5Hr1G112970.1 | Barley | nucleus | 85.54 | 74.74 |
| HORVU5Hr1G045760.1 | Barley | nucleus | 85.54 | 61.74 |
| EER93194 | Sorghum | nucleus, plastid | 65.06 | 59.02 |
| Os03t0820300-01 | Rice | nucleus | 60.24 | 58.82 |
| Zm00001d034641_P001 | Maize | nucleus | 60.84 | 58.38 |
| Zm00001d012968_P001 | Maize | nucleus | 56.63 | 53.71 |
| PGSC0003DMT400060523 | Potato | mitochondrion | 27.11 | 32.61 |
| Solyc05g054650.1.1 | Tomato | plastid | 27.71 | 30.26 |
| VIT_06s0004g04180.t01 | Wine grape | nucleus | 28.31 | 29.56 |
| KRG90559 | Soybean | nucleus | 29.52 | 28.32 |
| VIT_13s0019g00480.t01 | Wine grape | nucleus | 29.52 | 27.84 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 27.71 | 27.54 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 28.92 | 27.43 |
| KRH70509 | Soybean | nucleus | 28.92 | 26.67 |
| KRH36195 | Soybean | extracellular | 28.92 | 25.95 |
| PGSC0003DMT400060463 | Potato | nucleus | 25.3 | 20.19 |
Protein Annotations
| EnsemblPlants:TraesCSU01G075000.1 | EnsemblPlantsGene:TraesCSU01G075000 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF166 | PFAM:PF13912 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chrUn:+:67240758..67241258
Molecular Weight (calculated)
18128.4 Da
IEP (calculated)
8.702
GRAVY (calculated)
-0.634
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRAREEEPT VSLALSLSTD SSASTTTSDD SGTGAPTPAA PGKRTRRRRV VATSGEGDFV CKTCGRAFET FQALGGHRTS HLRGRHGLEL GVGVARAIKE
101: RQRREDRQQH DCHICGLGFE TGQALGGHMR RHREEMALDR WVALSDQEAG HQAAADRLPV LLELFV
101: RQRREDRQQH DCHICGLGFE TGQALGGHMR RHREEMALDR WVALSDQEAG HQAAADRLPV LLELFV
001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
Arabidopsis Description
At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.