Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0060g00070.t01 | Wine grape | nucleus | 16.04 | 48.31 |
| VIT_11s0052g00020.t01 | Wine grape | plastid | 15.3 | 8.52 |
| VIT_09s0018g01240.t01 | Wine grape | plastid | 15.3 | 8.49 |
| VIT_15s0048g02880.t01 | Wine grape | plasma membrane | 1.12 | 0.92 |
| Os08t0230100-00 | Rice | cytosol, extracellular | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_13s0019g03150 | EMBL:FN595998 | EnsemblPlants:VIT_13s0019g03150.t01 | EnsemblPlantsGene:VIT_13s0019g03150 | PANTHER:PTHR33709 | PANTHER:PTHR33709:SF2 |
| ProteinID:CCB56247 | ProteinID:CCB56247.1 | SEG:seg | UniParc:UPI000210AA42 | UniProt:F6HNM8 | MapMan:35.1 |
Description
No Description!
Coordinates
chr13:+:4221798..4222604
Molecular Weight (calculated)
28896.5 Da
IEP (calculated)
10.142
GRAVY (calculated)
-0.526
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTRIPPHQL SNGLYVSGRP DQHKERQPTT GSRAVPYTEG DVKKSGELGK TLDIAVVDPS AGGPPPLKPS RHSSSSQHTS GSVRSGPNSG QLPKLSNSGP
101: IHKKSSGPMP LQPAGLITSG PPGSSGSVGG RHSGQLEPSG SMGKTVYSSS VMSLNEEAKF GFKVSKTVMW VFLVVADLDL PMMEMGFRLA HGWRFEPKPK
201: FVIEMDFGLA HDEDIGLEFG AQPKHIDEGP HYSPRLPPSL RWPMSTSSWP IRLPQILNHF LKTSNIHN
101: IHKKSSGPMP LQPAGLITSG PPGSSGSVGG RHSGQLEPSG SMGKTVYSSS VMSLNEEAKF GFKVSKTVMW VFLVVADLDL PMMEMGFRLA HGWRFEPKPK
201: FVIEMDFGLA HDEDIGLEFG AQPKHIDEGP HYSPRLPPSL RWPMSTSSWP IRLPQILNHF LKTSNIHN
001: MAGRIQSHQL PNGLYVSGKL EQPKERPPTM AARAVPYTGG DIKKSGELGR MFDISVVDSA SFQGPPPLIV GGNSSGGTSR LQAPPRVSGS SSNPNSGSVR
101: SGPNSGSVKK FSGPLSQLQP TGLITSGSLG SSGPILSGSR RSGQLDHQLS NLASSKPKYG SSVTSLNVDP VRVGFKVPKA MVWAVLIVAA MGLLVGAFLT
201: VAVKKPVVIA AVLAAVCPAI VVLVWNCVWR RKGLLSFIKK YPDAELRGAI DGQFVKVTGV VTCGSIPLES SFQRTPRCVY VSTELYEYKG FGGKSANPKH
301: RCFSWGSRHA EKYVSDFYIS DFQSGLRALV KAGYGSKVSP FVKPATVANV TTQNKDLSPS FLKWLSDRNL SADDRVMRLK EGYIKEGSTV SVMGMVRRHD
401: NVLMIVPPAE AVSSGCRWWH CLFPTYADGL IITCDDNQNA DVIPV
101: SGPNSGSVKK FSGPLSQLQP TGLITSGSLG SSGPILSGSR RSGQLDHQLS NLASSKPKYG SSVTSLNVDP VRVGFKVPKA MVWAVLIVAA MGLLVGAFLT
201: VAVKKPVVIA AVLAAVCPAI VVLVWNCVWR RKGLLSFIKK YPDAELRGAI DGQFVKVTGV VTCGSIPLES SFQRTPRCVY VSTELYEYKG FGGKSANPKH
301: RCFSWGSRHA EKYVSDFYIS DFQSGLRALV KAGYGSKVSP FVKPATVANV TTQNKDLSPS FLKWLSDRNL SADDRVMRLK EGYIKEGSTV SVMGMVRRHD
401: NVLMIVPPAE AVSSGCRWWH CLFPTYADGL IITCDDNQNA DVIPV
Arabidopsis Description
At4g22290 [Source:UniProtKB/TrEMBL;Acc:Q8L6X7]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.