Factsheet for VIT_15s0048g02880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000687	Potato	endoplasmic reticulum, plasma membrane, plastid	50.76	59.29
Solyc01g096300.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	50.15	58.57
GSMUA_Achr5P19960_001	Banana	extracellular, plasma membrane, vacuole	45.57	51.56
Os04t0541900-00	Rice	cytosol, golgi, peroxisome	40.37	41.51
TraesCS2D01G387400.1	Wheat	golgi, plasma membrane, vacuole	39.76	41.14
TraesCS2B01G407700.1	Wheat	golgi, peroxisome, vacuole	39.45	40.31
TraesCS2A01G389500.1	Wheat	golgi, plasma membrane, vacuole	39.14	40.25
EES11199	Sorghum	cytosol, endoplasmic reticulum, golgi	40.67	40.18
Zm00001d025966_P001	Maize	golgi, peroxisome, plasma membrane	36.39	37.19
KRH11512	Soybean	plastid	35.78	28.06
KRH36527	Soybean	plastid	35.47	27.62
VIT_11s0052g00020.t01	Wine grape	plastid	39.45	26.82
Bra029474.1-P	Field mustard	cytosol, plasma membrane, plastid	32.42	26.63
CDX98741	Canola	cytosol, plasma membrane, plastid	35.78	26.53
VIT_09s0018g01240.t01	Wine grape	plastid	39.14	26.5
CDX94089	Canola	cytosol, plasma membrane, plastid	35.78	26.47
Bra019387.1-P	Field mustard	cytosol, plasma membrane, plastid	35.78	26.47
AT4G22290.1	Thale cress	cytosol, plasma membrane, plastid	35.47	26.07
CDX82929	Canola	cytosol, plasma membrane, plastid	34.56	25.62
CDX94532	Canola	cytosol, plasma membrane, plastid	33.33	25.53
CDX79143	Canola	cytosol, plasma membrane, plastid	34.56	25.51
Bra013607.1-P	Field mustard	cytosol, plasma membrane, plastid	34.56	25.51
CDY16692	Canola	cytosol, plasma membrane, plastid	32.72	25.0
VIT_14s0060g00070.t01	Wine grape	nucleus	0.61	2.25
VIT_13s0019g03150.t01	Wine grape	plastid	0.92	1.12
HORVU0Hr1G022000.9	Barley	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_15s0048g02880	EMBL:FN596739	EnsemblPlants:VIT_15s0048g02880.t01	EnsemblPlantsGene:VIT_15s0048g02880	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR33709	PANTHER:PTHR33709:SF1	ProteinID:CCB61279	ProteinID:CCB61279.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002109404	UniProt:F6I2W2	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr15:+:16991674..16996074

Molecular Weight (calculated)

36565.7 Da

IEP (calculated)

9.092

GRAVY (calculated)

0.139

Length

327 amino acids

Sequence
(BLAST)

001: MSVTSMDQKE KIHSIQSKTA VEKQYRERVM NDLSNASSIQ SHCYSCKPIP SQVLYVLVPL FFTGLAVSIF ILIAVHNAFL FVSLLCLSAL VAAFLIWNTV
101: NWRRSRALFC YLRSFPDSDL RLARHGQLVK ITGLVSCGNI SLESSYEKAT RCIYTSTLLY EYPGLGLKLA DAKVPCFGWG LAYCERFSTD FYITDSKSGI
201: RALVKAGSGS RVTPLIVESR LVNTTRKCRF LSSHFKKWLA ERNISGQARL LRLEEGYVKE GSSMAVIGML HRDNDALMIV QPPELLSTGC LWRKLLLPVD
301: IDGVILGVPE MVGPVANPPS SMQQWEH

Best Arabidopsis Sequence Match ( AT1G16860.1 )
(BLAST)

001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV

Arabidopsis Description

Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.