Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400000687 | Potato | endoplasmic reticulum, plasma membrane, plastid | 47.75 | 49.29 |
| Solyc01g096300.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 47.4 | 48.93 |
| VIT_15s0048g02880.t01 | Wine grape | plasma membrane | 51.56 | 45.57 |
| TraesCS2D01G387400.1 | Wheat | golgi, plasma membrane, vacuole | 48.44 | 44.3 |
| TraesCS2B01G407700.1 | Wheat | golgi, peroxisome, vacuole | 48.44 | 43.75 |
| TraesCS2A01G389500.1 | Wheat | golgi, plasma membrane, vacuole | 48.1 | 43.71 |
| HORVU2Hr1G092730.3 | Barley | endoplasmic reticulum | 44.29 | 43.54 |
| Os04t0541900-00 | Rice | cytosol, golgi, peroxisome | 46.71 | 42.45 |
| Zm00001d025966_P001 | Maize | golgi, peroxisome, plasma membrane | 46.02 | 41.56 |
| EES11199 | Sorghum | cytosol, endoplasmic reticulum, golgi | 47.06 | 41.09 |
| KRH11512 | Soybean | plastid | 39.45 | 27.34 |
| GSMUA_Achr1P10460_001 | Banana | plastid | 39.1 | 26.71 |
| KRH36527 | Soybean | plastid | 38.75 | 26.67 |
| GSMUA_Achr7P04950_001 | Banana | cytosol, plasma membrane, plastid | 38.41 | 25.69 |
| Bra029474.1-P | Field mustard | cytosol, plasma membrane, plastid | 35.29 | 25.63 |
| GSMUA_AchrUn_... | Banana | plastid | 39.45 | 25.0 |
| GSMUA_Achr9P13890_001 | Banana | plastid | 33.22 | 24.74 |
| CDX98741 | Canola | cytosol, plasma membrane, plastid | 37.72 | 24.72 |
| Bra019387.1-P | Field mustard | cytosol, plasma membrane, plastid | 37.72 | 24.66 |
| CDX94089 | Canola | cytosol, plasma membrane, plastid | 37.72 | 24.66 |
| AT4G22290.1 | Thale cress | cytosol, plasma membrane, plastid | 37.72 | 24.49 |
| CDX94532 | Canola | cytosol, plasma membrane, plastid | 35.64 | 24.12 |
| CDY16692 | Canola | cytosol, plasma membrane, plastid | 35.64 | 24.07 |
| GSMUA_Achr1P23590_001 | Banana | plastid | 38.41 | 24.03 |
| GSMUA_Achr9P22990_001 | Banana | plastid | 40.14 | 23.87 |
| GSMUA_Achr5P04950_001 | Banana | cytosol, plasma membrane, plastid | 37.72 | 23.85 |
| CDX82929 | Canola | cytosol, plasma membrane, plastid | 35.99 | 23.58 |
| CDX79143 | Canola | cytosol, plasma membrane, plastid | 35.99 | 23.48 |
| Bra013607.1-P | Field mustard | cytosol, plasma membrane, plastid | 35.99 | 23.48 |
| GSMUA_Achr3P27840_001 | Banana | plastid | 38.41 | 22.84 |
| GSMUA_Achr4P20140_001 | Banana | mitochondrion, plasma membrane, plastid | 0.69 | 0.48 |
| GSMUA_Achr3P28220_001 | Banana | mitochondrion | 0.69 | 0.44 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P19960_001 | EnsemblPlants:GSMUA_Achr5T19960_001 | EnsemblPlantsGene:GSMUA_Achr5G19960_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR33709 | PANTHER:PTHR33709:SF1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000296FBF7 | UniProt:M0T025 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative Uncharacterized membrane protein At1g16860 [Source:GMGC_GENE;Acc:GSMUA_Achr5G19960_001]
Coordinates
chr5:+:21595281..21600614
Molecular Weight (calculated)
31953.5 Da
IEP (calculated)
8.482
GRAVY (calculated)
0.464
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLSFAVAS DRRRWFGPVP AAVIRVVVPL LLAALAFAVF ILVVVHNAVL LVSVLVLSAL ILAFFLWNAA AYRRKLSLDL FLDRFPDTDL LSAKDSQLVK
101: VTGFASCGDL SLESSYEKAG RCVYTSTILY ECCGCHPKQA HVSHQCFQWN LAFVERMATD FYITDVKSGL RALVKAGQGS KVIPLIEENI LVNITSLNRE
201: LSSTLKKWLQ GRRLSCEARL LRLEEGYVIE GTCLTVMGML SRKNGVLVIV PLPETISTDC LLQKFLLPVD IDGLLLKTAN MSTANIRLS
101: VTGFASCGDL SLESSYEKAG RCVYTSTILY ECCGCHPKQA HVSHQCFQWN LAFVERMATD FYITDVKSGL RALVKAGQGS KVIPLIEENI LVNITSLNRE
201: LSSTLKKWLQ GRRLSCEARL LRLEEGYVIE GTCLTVMGML SRKNGVLVIV PLPETISTDC LLQKFLLPVD IDGLLLKTAN MSTANIRLS
001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV
Arabidopsis Description
Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.