Factsheet for GSMUA_Achr3P27840_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P22990_001	Banana	plastid	88.68	88.68
GSMUA_Achr1P10460_001	Banana	plastid	69.96	80.38
EES12814	Sorghum	plastid	78.19	79.0
Zm00001d026258_P001	Maize	cytosol, plastid, vacuole	78.19	78.84
Os08t0230200-01	Rice	cytosol, plastid	77.78	78.26
GSMUA_AchrUn_...	Banana	plastid	72.84	77.63
GSMUA_Achr7P04950_001	Banana	cytosol, plasma membrane, plastid	68.72	77.31
GSMUA_Achr5P04950_001	Banana	cytosol, plasma membrane, plastid	72.43	77.02
VIT_11s0052g00020.t01	Wine grape	plastid	75.72	76.51
KXG24772	Sorghum	cytosol, plasma membrane, plastid	74.49	75.73
GSMUA_Achr1P23590_001	Banana	plastid	70.78	74.46
Os04t0606500-01	Rice	plasma membrane	73.66	74.27
Zm00001d050191_P003	Maize	plasma membrane	72.84	74.06
GSMUA_Achr9P13890_001	Banana	plastid	59.05	73.97
HORVU7Hr1G061070.1	Barley	cytosol, plasma membrane, plastid	73.25	73.86
Zm00001d024364_P001	Maize	plasma membrane	74.28	72.93
Zm00001d002391_P005	Maize	cytosol, plasma membrane, plastid	77.98	72.47
TraesCS7A01G283600.2	Wheat	mitochondrion	73.05	71.14
TraesCS7D01G282000.3	Wheat	mitochondrion	73.05	71.14
PGSC0003DMT400025018	Potato	cytosol, mitochondrion, plasma membrane, plastid	68.93	70.97
Solyc12g017450.1.1	Tomato	cytosol, plasma membrane, plastid	68.93	70.97
PGSC0003DMT400025021	Potato	cytosol, plasma membrane, plastid	68.72	70.76
TraesCS2D01G429600.1	Wheat	cytosol, nucleus, plastid	63.58	70.71
TraesCS2B01G453000.2	Wheat	cytosol, plasma membrane, plastid	69.75	70.19
TraesCS2B01G453100.1	Wheat	cytosol, nucleus, plastid	62.96	70.02
TraesCS2A01G431500.2	Wheat	cytosol, plasma membrane, plastid	69.55	69.98
TraesCS2D01G429500.1	Wheat	cytosol, plasma membrane, plastid	69.55	69.98
TraesCS2A01G431600.1	Wheat	cytosol, nucleus, plastid	62.76	69.79
HORVU2Hr1G100660.2	Barley	cytosol, plasma membrane, plastid	69.34	69.77
HORVU2Hr1G100700.2	Barley	plastid	61.73	68.65
TraesCS7B01G176900.2	Wheat	plasma membrane	73.46	68.13
GSMUA_Achr5P19960_001	Banana	extracellular, plasma membrane, vacuole	22.84	38.41
GSMUA_Achr4P20140_001	Banana	mitochondrion, plasma membrane, plastid	7.61	8.94
GSMUA_Achr3P28220_001	Banana	mitochondrion	8.02	8.52

Protein Annotations

EnsemblPlants:GSMUA_Achr3P27840_001	EnsemblPlants:GSMUA_Achr3T27840_001	EnsemblPlantsGene:GSMUA_Achr3G27840_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33709	PANTHER:PTHR33709:SF4	SEG:seg	TMHMM:TMhelix	UniParc:UPI000296D692	UniProt:M0SIF0
MapMan:21.1.1.3.1	:	:	:	:	:

Description

Uncharacterized membrane protein At1g16860 [Source:GMGC_GENE;Acc:GSMUA_Achr3G27840_001]

Coordinates

chr3:+:27312814..27317726

Molecular Weight (calculated)

51960.8 Da

IEP (calculated)

9.742

GRAVY (calculated)

-0.042

Length

486 amino acids

Sequence
(BLAST)

001: MGSRFLSHQL SNGLYVSGRP EPPKEKPLSM SSAAMPYTGG DIKKSGELGK MFDLHVEKSR KSGPLNVPLK STSFGGAASQ SGPIMPNSSS RSSYSGSLSS
101: AVPGSGPSLV IVGSNRQKSN SGPLKHGDVV KKSSGPQSGG VIPMARQNSG PLPPVLPATG LITSGPISSG PLNSSGAPRK VSGPLESAGS MKLHSTFIVH
201: NQAVTKLSQD DGYSFSGSLP KLFLWCVGLL FIMGFIAGGF ILGAVHNAIL LIVVLVIFGV VAALCIWNIC YGRQAMIGFI ARYPDAELRT AKDGQYVKVS
301: GVVTCGNVPL ESSFHKVPRC VYTSTSLYEY RGLDSKTANS QHHRFTWGLR SLERNVVDFY ISDFQSGLRA LVKTGDGARV TPYVDESIVI DINSEKDLSP
401: EYLRWLRKRN LSHGDCVMQL KEGYIKEGST VSVMGVVKRN DNVLMIVPPS ESFSTGCQWA KCILPASLEG IVLRCENTSK IDVIPV

Best Arabidopsis Sequence Match ( AT1G78880.1 )
(BLAST)

001: MGSRYASHQL SNGLFVSGRP EQPKEKPPTM SSVAMPYTGG DIKKSGELGK MFDIPTDGTK SRKSGPITGG SSRSGAQSGP VPNATGRMSG NLASAGSNSM
101: KKTNSGPLSK HGEPLKKSSG PQSGGVTRQN SGPIPILPTT GLITSGPITS GPLNSSGAPR KISGPLDYSG SMKTHMPSVV HNQAVTTLAP EDDFSCMKSF
201: PKPVLWLVIL IFVMGFLAGG FILGAVHNAI LLIVVAVLFT VVAALFIWNI SCERRGITDF IARYPDADLR TAKNGQYVKV TGVVTCGNVP LESSFHRVPR
301: CVYTSTCLYE YRGWGSKPAN ASHRRFTWGL RSAERHVVDF YISDFQSGLR ALVKTGNGAK VTPLVDDSVV IDFKPGNEQA SPDFVRWLGK KNLTNDDRIM
401: RLKEGYIKEG STVSVIGVVQ RNDNVLMIVP TTEPLAAGWQ WSKCTFPASL EGIVLRCEDS SNVDAIPV

Arabidopsis Description

F9K20.7 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZVA7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.