Factsheet for GSMUA_Achr3P28220_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P20140_001	Banana	mitochondrion, plasma membrane, plastid	59.17	65.46
KRH44594	Soybean	cytosol, plasma membrane, plastid	9.83	12.82
Bra008384.1-P	Field mustard	plastid	9.39	10.26
KRH09609	Soybean	plastid	10.04	9.73
KRH23708	Soybean	plastid	10.04	9.54
KRH46999	Soybean	plastid	9.83	9.41
KRH47297	Soybean	cytosol, plasma membrane, plastid	9.83	9.3
AT1G16860.1	Thale cress	cytosol, mitochondrion, plastid, vacuole	9.61	9.28
KRH44657	Soybean	plastid	9.61	9.21
PGSC0003DMT400023759	Potato	cytosol, mitochondrion, plasma membrane, plastid	9.61	9.21
CDX83939	Canola	cytosol, plastid, vacuole	9.39	9.17
CDX96804	Canola	plastid	9.39	9.15
Bra016629.1-P	Field mustard	plastid	9.39	9.15
CDY26883	Canola	mitochondrion, plastid, vacuole	9.39	9.13
VIT_09s0018g01240.t01	Wine grape	plastid	9.61	9.11
GSMUA_Achr9P22990_001	Banana	plastid	9.61	9.05
GSMUA_Achr7P04950_001	Banana	cytosol, plasma membrane, plastid	8.52	9.03
GSMUA_Achr9P13890_001	Banana	plastid	7.64	9.02
CDY35123	Canola	plastid	9.17	9.01
Bra026021.1-P	Field mustard	plastid	9.17	9.01
GSMUA_Achr1P10460_001	Banana	plastid	8.3	8.98
AT1G78880.1	Thale cress	plastid	9.17	8.97
CDY40028	Canola	plastid	9.17	8.96
CDY14586	Canola	plastid	9.17	8.92
CDX83594	Canola	plastid	9.17	8.92
CDX88486	Canola	mitochondrion, plastid, vacuole	8.95	8.76
CDX87427	Canola	mitochondrion, plastid, vacuole	8.95	8.76
GSMUA_Achr1P23590_001	Banana	plastid	8.73	8.66
GSMUA_Achr5P04950_001	Banana	cytosol, plasma membrane, plastid	8.52	8.53
GSMUA_AchrUn_...	Banana	plastid	8.3	8.33
GSMUA_Achr3P27840_001	Banana	plastid	8.52	8.02
Bra035072.1-P	Field mustard	plasma membrane	8.3	6.83
Solyc03g123920.2.1	Tomato	plastid	6.11	6.32
GSMUA_Achr5P19960_001	Banana	extracellular, plasma membrane, vacuole	0.44	0.69
KRH44603	Soybean	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr3P28220_001	EnsemblPlants:GSMUA_Achr3T28220_001	EnsemblPlantsGene:GSMUA_Achr3G28220_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR33709	PANTHER:PTHR33709:SF2	SEG:seg	TMHMM:TMhelix	UniParc:UPI000294DE1E
UniProt:M0SII8	MapMan:35.1	:	:	:	:

Description

Putative Uncharacterized membrane protein At1g16860 [Source:GMGC_GENE;Acc:GSMUA_Achr3G28220_001]

Coordinates

chr3:-:27565620..27571983

Molecular Weight (calculated)

50417.8 Da

IEP (calculated)

9.362

GRAVY (calculated)

-0.112

Length

458 amino acids

Sequence
(BLAST)

001: MSVRRTTHQL SSGMIVSGPP EPPKERAPAV GLRAAPYTGG DVRKSGELGK MFDIPPADPG APSRPVSKSH SGPLARSAPS SGSGPVPRKT SGPLAQIPPT
101: GLITSGPARS SGGQPELSPR PARKNKGEAY GGAVTAPEEE AFAFGVSRVW RWVLVGVFVA GLAAGAFVWV AVGRPEILIG VAALMAAVGV LAVWNWSMGR
201: KEVERFWRCY PNTSIDSRNL PIGKFVKITG VSSLCLLFEP ANVEQIILDQ ASRRHIVTPL GYLCRHIIFL THYLWWISLN QYVKHVTCGS IPLESSYRNI
301: SRCIYTSTEL YEYKHFTWGL KYAERYVADF YISDPDTGTR FLVRAGNGAR VTCFVKPATV MEINKDNKEL SPDFLSWLTE HNITSGSHIM RLKEGYIKEG
401: NTVSVMGILR KHENLIMIDP PEDIVSTGCQ WRRFFFPMSV EGLILIGDER PDEVVYQV

Best Arabidopsis Sequence Match ( AT1G16860.1 )
(BLAST)

001: MGSRYPSHQL SNGLFVSGRP EQPKERAPTM SAVAMPYTGG DIKRSGELGK MFDIPADGTK SRKSGPIPGA PSRSGSFAGT AQSGPGAPMA TGRMSGSLAS
101: AGSVSMKKTN SGPLSKHGEP LKKSSGPQSG GVTRQNSGSI PILPATGLIT SGPITSGPLN SSGAPRKVSG PLDSSGLMKS HMPTVVHNQA VTTLGPEDDF
201: SCLKSFPKPV LWLVVLIFIM GFLAGGFILG AVHNPILLVV VAILFTVVAA LFIWNICWGR RGITDFIARY PDADLRTAKN GQHVKVTGVV TCGNVPLESS
301: FHRVPRCVYT STCLYEYRGW GSKPANSSHR HFTWGLRSSE RHVVDFYISD FQSGLRALVK TGSGAKVTPL VDDSVVIDFK QGSEQVSPDF VRWLGKKNLT
401: SDDRIMRLKE GYIKEGSTVS VIGVVQRNDN VLMIVPSSEP LAAGWQWRRC TFPTSLEGIV LRCEDSSNVD AIPV

Arabidopsis Description

Uncharacterized membrane protein At1g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ45]
SUBAcon: [mitochondrion,plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.